On Fri, Nov 19, 2004 at 09:33:50AM +1000, Praveen Madala wrote:
> Hi,
> I am trying to model a protein with a restrain file
>
> MODELLER6v2 VERSION: USER FORMAT
This is not a valid restraints file. See
http://salilab.org/modeller/7v7/manual/node100.html
For user format, the first line should be
MODELLER5 VERSION: USER FORMAT
> R 3 1 1 21 2 2 0 7.1000
> 0.3387 SG:140 SG:222
If this really is on two lines in your restraints file, it won't work.
Modeller expects each restraint to be on one line.
> as I mensioed before, the program is not identifying the
> the SG:140 CG:211, I think it is not identifying gama
> atoms......I dont know that how i am writing the gamma
> atom is wrong ???
There's no way to tell that unless you send the rest of your input
files.
Ben Webb, Modeller Caretaker
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