On Tue, Nov 23, 2004 at 04:24:55PM +0200, vivek sharma wrote:
> To generate a model containing Hydrogen atoms, is it necessary that
> templates should have Hydrogen atoms too or these will be modeled by
> MODELER itself?
No, the templates do not need to have hydrogen atoms. See
the examples/all-hydrogens directory in the Modeller distribution for an
example of building such a model.
Bear in mind that while Modeller will construct hydrogen atoms for you,
their position is determined solely by the parameter files; no
homology-derived restraints are used.
Ben Webb, Modeller Caretaker
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