[modeller_usage] doubt regarding modller usage

[E rajakumar <>]

Sir
I have installed modeller7v7 in windows2000. The input
files are in 'C:/Program Files/Modeller7v7
after running the mod7v7 model-default, it could
recognise model-default.top file but log file is
showing that alignment file is not found

please, could u mail me what is the problem?

thank you in advance.
rajkumar
The log file is as follows

                         MODELLER 7v7, Sep 12, 2004
09:15pm

     PROTEIN STRUCTURE MODELLING BY SATISFACTION OF
SPATIAL RESTRAINTS

                                                      
            
                     Copyright(c) 1989-2004 Andrej
Sali            
                            All Rights Reserved       
            
                                                      
            
                             Written by A. Sali       
            
                               with help from         
            
           B. Webb, M.S. Madhusudhan, M-Y. Shen, M.A.
Marti-Renom, 
                     N. Eswar, F. Alber, B. Oliva, A.
Fiser,       
                    R. Sanchez, B. Yerkovich, A.
Badretdinov,      
                      F. Melo, J.P. Overington, E.
Feyfant         
                 University of California, San
Francisco, USA      
                    Rockefeller University, New York,
USA          
                      Harvard University, Cambridge,
USA           
                   Imperial Cancer Research Fund,
London, UK       
              Birkbeck College, University of London,
London, UK   


Kind, OS, HostName, Kernel, Processor: 4, Win2000
build  2195 Service Pack 2, E007A, uni, x86 Family  15
Model  2 Stepping  4
Date and time of compilation         : 09/13/2004
17:17:22
Job starting time (YY/MM/DD HH:MM:SS): 2005/01/22 
20:25:10.812

TOP_________>   109  749 SET ALNFILE  = 'c:/Program
Files/Modeller7v7/alignment' 
 
TOP_________>   110  750 SET KNOWNS   = '1amu' 
 
TOP_________>   111  751 SET SEQUENCE = '1fax' 
 
TOP_________>   112  752 SET ATOM_FILES_DIRECTORY =
'c:/Program Files/Modeller7v7/;
                      1amu' 
 
TOP_________>   113  753 SET STARTING_MODEL = 1 
 
TOP_________>   114  754 SET ENDING_MODEL  = 1 
 
TOP_________>   115  755 CALL ROUTINE = 'model' 
 
TOP_________>   116  419 CALL ROUTINE = 'getnames' 
 
TOP_________>   117  534 STRING_IF STRING_ARGUMENTS =
MODEL 'undefined', OPERATION;
                       = 'EQ', THEN =    
'STRING_OPERATE OPERATION = CONCATENA;
                      TE, STRING_ARGUMENTS = SEQUENCE
.ini, RESULT = MODEL' 
 
TOP_________>   118  535 STRING_IF STRING_ARGUMENTS =
CSRFILE 'undefined', OPERATI;
                      ON = 'EQ', THEN =    
'STRING_OPERATE OPERATION = CONCATE;
                      NATE, STRING_ARGUMENTS =
SEQUENCE .rsr,  RESULT = CSRFILE;
                      ' 
 
TOP_________>   119  536 STRING_OPERATE OPERATION =
'CONCATENATE',                ;
                         STRING_ARGUMENTS = SEQUENCE
'.sch',  RESULT = SCHFILE 
 
TOP_________>   120  537 STRING_OPERATE OPERATION =
'CONCATENATE',                ;
                        STRING_ARGUMENTS = SEQUENCE
'.mat',  RESULT = MATRIX_FI;
                      LE 
 
TOP_________>   121  538 SET ROOT_NAME = SEQUENCE 
 
TOP_________>   122  539 RETURN 
 
TOP_________>   123  420 CALL ROUTINE = 'homcsr' 
 
TOP_________>   124  112 READ_ALIGNMENT FILE =
ALNFILE, ALIGN_CODES = KNOWNS SEQUE;
                      NCE 
 

Dynamically allocated memory at         amaxseq
[B,kB,MB]:        84067      82.097     0.080
fullfn__230E> File not found:  c:/Program
Files/Modeller7v7/alignment
              Directories:  
              Extensions :  :.ali
              Prefixes   : nothing, pdb
recover____E> ERROR_STATUS >= STOP_ON_ERROR:        1 
     1

Dynamically allocated memory at          finish
[B,kB,MB]:        84067      82.097     0.080
Starting time                                         
  : 2005/01/22  20:25:10.812
Closing time                                          
  : 2005/01/22  20:25:12.140
Total CPU time [seconds]                              
  :       1.19




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