Modeller_Usage Mailing List (by thread)
- [modeller_usage] Modeller 7v7 Stack problems, tried EVERYTHING!!!!,
Tom Petty
- [modeller_usage] Re: modeller_usage Digest, Vol 4, Issue 1,
rathan kar
- [modeller_usage] Disulfide bonds in dimer,
Vladimir Chupakhin
- [modeller_usage] Modeller multiple alignment,
Andreas Kowarsch
- [modeller_usage] question,
drugdesign
- [modeller_usage] doubt regarding modller usage,
E rajakumar
- [modeller_usage] Question on an error message,
Cen Gao
- [modeller_usage] (no subject),
Johnwin Silvester
- Other STACK PROBLEMS and Re: [modeller_usage] Modeller 7v7 Stack problems, tried EVERYTHING!!!!,
Carlos Luiz N. dos SANTOS
- [modeller_usage] restraints on accessibility,
Remo Calabrese
- [modeller_usage] problem,
vivek sharma
- [modeller_usage] Inclusion of zinc atoms, Add_restraint problem?,
Cardenas, Alfredo
- [modeller_usage] regarding alignement .,
E rajakumar
- [modeller_usage] problems running scripts under mod7v7,
Edoardo Saccenti
- [modeller_usage] modelling heterodimer.,
DUVVURU Raja
- [modeller_usage] problem!,
vivek sharma
- [modeller_usage] SO4 ion coordinates not written,
Cheri M Turman
- [modeller_usage] Re: Inclusion of zinc atoms, Add_restraint problem?,
Cardenas, Alfredo
- [modeller_usage] clustering problem,
Xin Hu
- [modeller_usage] Re: SO4 ion coordinates not written,
Cheri M Turman
- [modeller_usage] dymer modelling,
Edoardo Saccenti
- [modeller_usage] Re: Inclusion of zinc atoms, Add_restraint problem?,
Cardenas, Alfredo
- [modeller_usage] a question about SEQUENCE_SEARCH,
yunierkis
- [modeller_usage] another stack overflow,
DUVVURU Raja
- [modeller_usage] problems defining a new residue type,
barmalay alterman
- [modeller_usage] Re: problems defining a new residue type (continued),
barmalay alterman
- [modeller_usage] Modeller Help: New User,
Chaminda Basnayake
- [modeller_usage] redundant error check_a_337E> Structure not read in: 1,
Nicolas
- [modeller_usage] how to predict the model as a dimer,
Tong Chen
- [modeller_usage] Distances longer than 8.0 Angstrom?,
Amjad Farooq
- [modeller_usage] COVALENT_CYS,
Ori Kalid
- [modeller_usage] setting the DEVIATION,
Ori Kalid
- [modeller_usage] Atom Index is out of bounds:,
Amjad Farooq
- [modeller_usage] Regarding modelling,
rajesh rengaraj
- [modeller_usage] protein-ligand complex,
Praveen Madala
- [modeller_usage] Optimization or Refinement of Homology Model,
David Piper
- [modeller_usage] new to modeller - optimization of homology model,
Scavetta, Robert D.
- [modeller_usage] docking software,
Tong Chen
- [modeller_usage] bug report,
prakesh amresh
- [modeller_usage] modeller error,
rathankar rao
- [modeller_usage] Question about restraints,
akiheikk
- [modeller_usage] Problem running modeller7v7,
sritin
- [modeller_usage] Unknown residue type, position, sequence...,
서주현
- [modeller_usage] modeller running-help,
Elavazhagan
- [modeller_usage] help,
arul prakasam peter
- [modeller_usage] amino acid numbering,
Michael Grabe
- [modeller_usage] Modeller7v7 on Fedora core 2,
Xiao-Ping Zhang
- [modeller_usage] problem_again,
vivek sharma
- [modeller_usage] Regarding manual protein sequence alignment,
rajesh rengaraj
- [modeller_usage] Thanks to our groups for quick response,
rajesh rengaraj
- [modeller_usage] version 6 and 7 scripts,
Paula R. Kuser Falcão
- [modeller_usage] how can i apply 'rsr' file for optimisation of my model,
apurba kumar samal
- [modeller_usage] USING OF RESTRAIN FILE 'RSR' FOR OPTIMISATION OF MODEL,
apurba kumar samal
- [modeller_usage] Re: modeller_usage Digest, Vol 4, Issue 21,
drugdesign
- [modeller_usage] Allocate error 494-reg,
Elavazhagan
- [modeller_usage] work help,
randy garmon
- [modeller_usage] regarding Interaction Energy...,
Himanshu Grover
- [modeller_usage] Problems modelling sections of sequence on different templates,
pitm0020
- [modeller_usage] dear modeller,
arul prakasam
- [modeller_usage] NOC (current version 1.5.2.10) a new, free program for protein structure model-building, visualization, validation and analysis ...,
Chenmengen
- [modeller_usage] Problem with modeller7v7,
Magali Cottevieille
- [modeller_usage] TYROSINE KINASE HOMOLOGY MODELLING,
Obdulia Rabal
- [modeller_usage] request,
selvaraj manikandan mani
- [modeller_usage] question re. Modeller6v2 (re. fold),
Vicente Reyes
- [modeller_usage] Same coordinates,
Joanne Hanna
- [modeller_usage] tutorial on mod7v7,
Paula R. Kuser Falcão
- [modeller_usage] potassium ion,
fredrik
- [modeller_usage] Modelling Hydrogen bond in helix,
Panapat Uawithya
- [modeller_usage] joining of the same domain,
rathankar rao
- [modeller_usage] Modeller 8v0 release,
Modeller Caretaker
- [modeller_usage] Python interpreter with Modeller 8v0,
gerald . quon
- [modeller_usage] prb encountered, plz help,
rathankar rao
- [modeller_usage] pick.atoms,
jean-marc vuissoz
- [modeller_usage] An error with final_malign3d,
Mensur Dlakic
- [modeller_usage] Multidomain protein,
Ranjit Kumar
- [modeller_usage] Loops,
John Penniston
- [modeller_usage] MODELER v6.3 script,
O'MAHONY, BRIAN
- [modeller_usage] model refinement and assessment,
Stephen A. Smith
- [modeller_usage] heteroatom,
arul prakasam
- [modeller_usage] tetramers in symmetry,
hchoe
- [modeller_usage] absolute position restraints,
"Frank Böckler"
- [modeller_usage] bus error,
mdatt
- [modeller_usage] segmentation fault,
mdatt
- [modeller_usage] modv8.0 on amd64,
Kim Branson
- [modeller_usage] forcing alignment of particular residues,
gerald . quon
- [modeller_usage] Spatial restraints as "flat bottom" potential,
Esben Jannik Bjerrum
- [modeller_usage] Problem about tutorial (Iterative Example),
Jianying (Julia) Ding
- [modeller_usage] multiple templates,
Swagatam Ray
- [modeller_usage] model8v0,
bu weiming
- [modeller_usage] dihedral restraints,
Judy Barnett-Norris
- [modeller_usage] heme moiety of CYP450,
O'MAHONY, BRIAN
- [modeller_usage] modeller 8v0 on Centos4 (aka RHEL 4),
Ezequiel H Panepucci
- [modeller_usage] signif_cutoff,
Jean-Marc Vuissoz
- [modeller_usage] problem with modeller,
Maria . Teresa . Azzollini
- [modeller_usage] modeling a complex,
Edoardo Saccenti
- [modeller_usage] Clustering,
John Penniston
- [modeller_usage] Glycosylation on Asn,
John Simms
- [modeller_usage] Python command,
John Penniston
- [modeller_usage] Modelling a nucleic acid ligand present in the PDB file,
Charlotte HABEGGER-POLOMAT
- [modeller_usage] array too small,
John Penniston
- [modeller_usage] problems with modeller,
limongelli
- [modeller_usage] Pick Restraints,
John Penniston
- [modeller_usage] not generating pdb files,
gerald . quon
- [modeller_usage] Modeller 8v1 release,
Modeller Caretaker
- [modeller_usage] N-terminal acetylation via 'automodel?' ?,
Niels Johan Christensen
- [modeller_usage] disulfide bonds,
Dmitry Osolodkin
- [modeller_usage] Incorrect Topology library?,
Jeff Bush
- [modeller_usage] Homology model at specific pH,
Panapat Uawithya
- [modeller_usage] Re: your message in Modeller user list.,
Ezequiel H Panepucci
- [modeller_usage] Terminal patching (acetylation/amidation) in Modeller 7.7,
Niels Johan Christensen
- [modeller_usage] violation of restraints,
Marsita M
- [modeller_usage] no alignment,
Arnout Voet
- [modeller_usage] NOC 2.0 released,
Chenmengen
- [modeller_usage] Some theoretical questions,
Dmitry Osolodkin
- [modeller_usage] adding loops while retaining template structure,
Peter C. Lai
- [modeller_usage] alignment file?,
Rozana Othman
- [modeller_usage] determination of symmetry,
rathankar rao
- [modeller_usage] mutant protein,
- [modeller_usage] Modelling Molybdenum atom,
belal najjar
- [modeller_usage] allhydrogen model and nselat error,
Starr Hazard
- [modeller_usage] Modeller 8v1 on x86_64,
Jarrod Smith
- [modeller_usage] mod8v1: command not found,
Bo Yang
- [modeller_usage] Newbie question : restraining secondary structure,
Parantu Shah
- [modeller_usage] Re: Newbie question : restraining secondary structure,
Frederico Arnoldi
- [modeller_usage] Restraining structure to Alpha,
John Penniston
- [modeller_usage] Correction- Restraining structure to Alpha,
John Penniston
- [modeller_usage] restraint violations files,
Maria Turano
- [modeller_usage] modelling multiple loops,
David L. Bostick
- [modeller_usage] Hydrophobic restraints question,
qiuyan_wang
- [modeller_usage] loop modelling,
Judy Barnett-Norris
- [modeller_usage] Modeller 8 forrtl severe 157,
Rodrigo Reston
- [modeller_usage] Error: Unable to open alignment file,
Amin Momin
- [modeller_usage] modeller usage,
Guido Leoni
- [modeller_usage] crsplin_223E> Internal error: array too small: MAXSPL current maximum, current need: 400 420.,
Guido Leoni
- [modeller_usage],
sankari thirumal
- [modeller_usage] template pdb file has no header,
Akansha Saxena
- [modeller_usage] profile files,
Jason M Walraven
- [modeller_usage] Internal error: array too small,
hchoe
- [modeller_usage] Tutorial for beginners?,
Antonio Arroyo Luque
- [modeller_usage] Nucleic acid-protein complexe,
Charlotte Habegger-Polomat
- [modeller_usage] What I'm doing wrong?,
Antonio Arroyo Luque
- [modeller_usage] Re: modeller_usage Digest, Vol 4, Issue 75,
rathankar rao
- [modeller_usage] difficulty in modelllllling a chimeric protein, plz help,
rathankar rao
- [modeller_usage] structure not read in,
sankari thirumal
- [modeller_usage] Building tetramers,
Cesar Luis Avila
- [modeller_usage] question about basic modelling,
Mehmet Serkan Apaydin
- [modeller_usage] Error on Alpha Unix,
Ricardo Nicoluci
- [modeller_usage] Repeating basic tutorial with my protein - stuck at malign3d step,
Charlotte Habegger-Polomat
- Re: [modeller_usage] Repeating basic tutorial with my protein - stuck at malign3d step,
Modeller Caretaker
[modeller_usage] sequence alignment of pdb file with missing residues,
Andy Arvai
[modeller_usage] Problems with cis proline,
Eva María Priego
Re: [modeller_usage] sequence alignment of pdb file with missing residues],
Charlotte Habegger-Polomat
[modeller_usage] problem in modelling,
rathankar rao
[modeller_usage] Converting (old) top script to (new) python ones,
Eric Hajjar
[modeller_usage] Problems with mod8v1,
Elza Helena Andrade Barbosa
[modeller_usage] Hi,
zhurx
[modeller_usage] symmetry in automodel,
Gordon Wells
[modeller_usage] Python Modeller Script,
Ricardo Nicoluci
[modeller_usage] modeling of transmembrane proteins,
Akansha Saxena
[modeller_usage] Modelling nucleic acids,
nisha
[modeller_usage] modelling of complexes,
Arnout Voet
[modeller_usage] DOPE score,
Leyla Celik
[modeller_usage] No optimization,
mathieu coincon
[modeller_usage] Re: modeller_usage Digest, Vol 4, Issue 90,
Prabhakar. G.
[modeller_usage] Re: plotting with GNU,
Prabhakar. G.
[modeller_usage] how to create .ali file,
sankari thirumal
[modeller_usage] File not found,
Ricardo Nicoluci
[modeller_usage] (sans objet),
Riadh HAMMAMI
[modeller_usage] model-segment.py problem,
Guido Leoni
[modeller_usage] RE:model-segment.py,
Riadh HAMMAMI
[modeller_usage] howto reverse polarity,
Peter C. Lai
[modeller_usage] PSC WORKSHOP: COMPUTATIONAL BIOPHYSICS WORKSHOP,
Troy Wymore
[modeller_usage] error when trying to set MDT_LIB_FILE and BIN_LIB_FILE,
Daniel Rigden
[modeller_usage] multiple protein conformations,
jf163201
[modeller_usage] chain,
PARVINI
[modeller_usage] problem with modelling a non-template helix,
Renée Vancraenenbroeck
[modeller_usage] constrain template secondary structure in energy minimization/loop building,
Frank Peelman
[modeller_usage] model assessment method,
서주현
[modeller_usage] Question running script on cluster,
zkatsim
[modeller_usage] Re: model assessment method,
Mensur Dlakic
[modeller_usage] topology for nicotine,
Hai-long Wang
[modeller_usage] Refinement of part of model,
Matt wagner
[modeller_usage] add new residue type,
Hai-long Wang
[modeller_usage] error,
sankari thirumal
[modeller_usage] Modeling multiple domains,
randalla
[modeller_usage] Builing models with big distances,
Fabio Passetti
[modeller_usage] Problems w/ rand_seed for Mod8v1,
zkatsim
[modeller_usage] modeller,
Renée Vancraenenbroeck
[modeller_usage] The assessment of protein model with the function in modeller 8.1,
서주현
[modeller_usage] import site failed error,
S.Sundar Raman
[modeller_usage] Incorrect Number or residues/Starting position,
Kevin Galens (RIT Student)
[modeller_usage] Loop redefine on tetramer,
bmbbl
[modeller_usage] Dope Gnu Plot,
Mattias de Hollander
[modeller_usage] max number of optima in resdih.lib,
Luis Gracia
[modeller_usage] How many models to generate?,
Charlotte Habegger-Polomat
[modeller_usage] Occupancy problem ?,
Nicolas
[modeller_usage] restrain beta strands and plates,
Arnout Voet
[modeller_usage] RE: How many models to generate?,
Frederico Arnoldi
[modeller_usage] How to choose the best model?,
carromeu
[modeller_usage] Re: modeller_usage Digest, Vol 4, Issue 107,
rathankar rao
[modeller_usage] The large gap on sequence is a big problem,
นายจิตระยุทธ์ จิตอ่อนน้อม
[modeller_usage] dynamic memory allocation failed,
Ilya Shlyakhter
[modeller_usage] loops iterations and various DOPE scores,
Starr Hazard
[modeller_usage] General Homolgy question,
Yogesh Sabnis
[modeller_usage] How to include alignment to model_symmetry_define(),
bmbbl
[modeller_usage] file name problem,
Starr Hazard
[modeller_usage] Re: To Model missing domains in the content of the rest,
Shirley Li
[modeller_usage] To use separate templates for different region of a protein,
Shirley Li
[modeller_usage] Re: modeller_usage Digest, Vol 4, Issue 113,
rathankar rao
[modeller_usage] beta-sheets and alpha-helixes,
Matthias Negri
[modeller_usage] is LOOP threading a common result?,
Starr Hazard
[modeller_usage] Loop model selection,
bmbbl
[modeller_usage] modelling loops with nmr restraints,
cubellis
[modeller_usage] what i am doing wrong?,
Anna Kaczynska
[modeller_usage] out_put directory,
doppelt olivia
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