Modeller_Usage Mailing List (by date)

Thread Index

[modeller_usage] Modeller 7v7 Stack problems, tried EVERYTHING!!!! 2005/01/13
- From: Tom Petty <>
[modeller_usage] Re: modeller_usage Digest, Vol 4, Issue 1 2005/01/13
- From: rathan kar <>
[modeller_usage] Disulfide bonds in dimer 2005/01/14
- From: Vladimir Chupakhin <>
[modeller_usage] Modeller multiple alignment 2005/01/14
- From: "Andreas Kowarsch" <>
[modeller_usage] question 2005/01/18
- From: "drugdesign" <>
RE: [modeller_usage] question 2005/01/18
- From: "Schweikardt, Thorsten" <>
Re: [modeller_usage] question 2005/01/18
- From: Modeller Caretaker <>
Re: [modeller_usage] Modeller 7v7 Stack problems, tried EVERYTHING!!!! 2005/01/21
- From: Modeller Caretaker <>
Re: [modeller_usage] Modeller multiple alignment 2005/01/21
- From: Modeller Caretaker <>
[modeller_usage] doubt regarding modller usage 2005/01/22
- From: E rajakumar <>
[modeller_usage] Question on an error message 2005/01/22
- From: "Cen Gao" <>
Re: [modeller_usage] Question on an error message 2005/01/22
- From: Modeller Caretaker <>
Re: [modeller_usage] doubt regarding modller usage 2005/01/22
- From: Modeller Caretaker <>
[modeller_usage] (no subject) 2005/01/23
- From: "Johnwin Silvester" <>
[modeller_usage] (no subject) 2005/01/23
- From: "Johnwin Silvester" <>
Other STACK PROBLEMS and Re: [modeller_usage] Modeller 7v7 Stack problems, tried EVERYTHING!!!! 2005/01/24
- From: "Carlos Luiz N. dos SANTOS" <>
Re: Other STACK PROBLEMS and Re: [modeller_usage] Modeller 7v7 Stack problems, tried EVERYTHING!!!! 2005/01/24
- From: Modeller Caretaker <>
Re: [modeller_usage] Disulfide bonds in dimer 2005/01/24
- From: Modeller Caretaker <>
[modeller_usage] align2d again 2005/01/27
- From: "Carlos Luiz N. dos SANTOS" <>
Re: [modeller_usage] align2d again 2005/01/27
- From: Modeller Caretaker <>
[modeller_usage] restraints on accessibility 2005/01/28
- From: Remo Calabrese <>
[modeller_usage] problem 2005/01/28
- From: vivek sharma <>
Re: [modeller_usage] problem 2005/01/28
- From: Modeller Caretaker <>
Re: [modeller_usage] problem 2005/01/28
- From: vivek sharma <>
[modeller_usage] Inclusion of zinc atoms, Add_restraint problem? 2005/01/28
- From: "Cardenas, Alfredo" <>
Re: [modeller_usage] Inclusion of zinc atoms, Add_restraint problem? 2005/01/28
- From: Modeller Caretaker <>
Re: [modeller_usage] Inclusion of zinc atoms, Add_restraint problem? 2005/01/28
- From: "Cardenas, Alfredo" <>
[modeller_usage] regarding alignement . 2005/01/28
- From: E rajakumar <>
[modeller_usage] problems running scripts under mod7v7 2005/01/31
- From: Edoardo Saccenti <>
Re: [modeller_usage] problems running scripts under mod7v7 2005/01/31
- From: Modeller Caretaker <>
Re: [modeller_usage] restraints on accessibility 2005/01/31
- From: Modeller Caretaker <>
[modeller_usage] modelling heterodimer. 2005/02/01
- From: "DUVVURU Raja" <>
[modeller_usage] problem! 2005/02/01
- From: vivek sharma <>
[modeller_usage] SO4 ion coordinates not written 2005/02/01
- From: "Cheri M Turman" <>
[modeller_usage] SO4 ion coordinates not written 2005/02/02
- From: "Cheri M Turman" <>
[modeller_usage] Re: Inclusion of zinc atoms, Add_restraint problem? 2005/02/02
- From: "Cardenas, Alfredo" <>
[modeller_usage] clustering problem 2005/02/03
- From: Xin Hu <>
[modeller_usage] Re: SO4 ion coordinates not written 2005/02/03
- From: "Cheri M Turman" <>
[modeller_usage] dymer modelling 2005/02/04
- From: "Edoardo Saccenti" <>
[modeller_usage] Re: Inclusion of zinc atoms, Add_restraint problem? 2005/02/04
- From: "Cardenas, Alfredo" <>
[modeller_usage] a question about SEQUENCE_SEARCH 2005/02/04
- From: <>
Re: [modeller_usage] a question about SEQUENCE_SEARCH 2005/02/04
- From: Modeller Caretaker <>
Re: [modeller_usage] Re: SO4 ion coordinates not written 2005/02/04
- From: Modeller Caretaker <>
[modeller_usage] another stack overflow 2005/02/05
- From: "DUVVURU Raja" <>
[modeller_usage] problems defining a new residue type 2005/02/07
- From: barmalay alterman <>
[modeller_usage] Re: problems defining a new residue type (continued) 2005/02/08
- From: barmalay alterman <>
[modeller_usage] Modeller Help: New User 2005/02/10
- From: "Chaminda Basnayake" <>
[modeller_usage] (no subject) 2005/02/10
- From: Mensur Dlakic <>
[modeller_usage] redundant error check_a_337E> Structure not read in: 1 2005/02/16
- From: "Nicolas" <>
[modeller_usage] how to predict the model as a dimer 2005/02/17
- From: Tong Chen <>
[modeller_usage] Distances longer than 8.0 Angstrom? 2005/02/18
- From: Amjad Farooq <>
Re: [modeller_usage] Distances longer than 8.0 Angstrom? 2005/02/18
- From: Modeller Caretaker <>
[modeller_usage] COVALENT_CYS 2005/02/20
- From: "Ori Kalid" <>
[modeller_usage] setting the DEVIATION 2005/02/20
- From: "Ori Kalid" <>
[modeller_usage] Atom Index is out of bounds: 2005/02/21
- From: Amjad Farooq <>
Re: [modeller_usage] setting the DEVIATION 2005/02/21
- From: Karsten Suhre <>
[modeller_usage] Regarding modelling 2005/02/21
- From: rajesh rengaraj <>
[modeller_usage] protein-ligand complex 2005/02/21
- From: "Praveen Madala" <>
Re: [modeller_usage] (no subject) 2005/02/21
- From: Modeller Caretaker <>
[modeller_usage] Optimization or Refinement of Homology Model 2005/02/22
- From: "David Piper" <>
Re: [modeller_usage] Optimization or Refinement of Homology Model 2005/02/22
- From: Modeller Caretaker <>
[modeller_usage] new to modeller - optimization of homology model 2005/03/01
- From: "Scavetta, Robert D." <>
[modeller_usage] docking software 2005/03/04
- From: Tong Chen <>
[modeller_usage] bug report 2005/03/05
- From: "prakesh amresh" <>
Re: [modeller_usage] bug report 2005/03/06
- From: Modeller Caretaker <>
[modeller_usage] modeller error 2005/03/07
- From: rathankar rao <>
Re: [modeller_usage] modeller error 2005/03/07
- From: "Raghurama P. Hegde" <>
[modeller_usage] Question about restraints 2005/03/08
- From:
Re: [modeller_usage] Question about restraints 2005/03/08
- From: Modeller Caretaker <>
[modeller_usage] Problem running modeller7v7 2005/03/09
- From:
Re: [modeller_usage] Problem running modeller7v7 2005/03/09
- From: Modeller Caretaker <>
[modeller_usage] Unknown residue type, position, sequence... 2005/03/10
- From: "서주현"<>
Re: [modeller_usage] Unknown residue type, position, sequence... 2005/03/10
- From: Joel Tyndall <>
[modeller_usage] modeller running-help 2005/03/10
- From: Elavazhagan <>
Re: [modeller_usage] modeller running-help 2005/03/10
- From: Modeller Caretaker <>
[modeller_usage] help 2005/03/11
- From: "arul prakasam peter" <>
[modeller_usage] amino acid numbering 2005/03/11
- From: Michael Grabe <>
Re: [modeller_usage] amino acid numbering 2005/03/11
- From: Modeller Caretaker <>
[modeller_usage] Re: modeller running-help 2005/03/12
- From: Elavazhagan <>
[modeller_usage] help 2005/03/12
- From: arul prakasam <>
[modeller_usage] Re: modeller running-help 2005/03/12
- From: Modeller Caretaker <>
[modeller_usage] Modeller7v7 on Fedora core 2 2005/03/14
- From: Xiao-Ping Zhang <>
[modeller_usage] problem_again 2005/03/14
- From: vivek sharma <>
Re: [modeller_usage] Modeller7v7 on Fedora core 2 2005/03/14
- From: Modeller Caretaker <>
Re: [modeller_usage] problem_again 2005/03/14
- From: Modeller Caretaker <>
Re: [modeller_usage] problem_again 2005/03/14
- From: vsharma <>
[modeller_usage] Regarding manual protein sequence alignment 2005/03/15
- From: rajesh rengaraj <>
Re: [modeller_usage] Regarding manual protein sequence alignment 2005/03/15
- From: Karsten Suhre <>
[modeller_usage] Re: Regarding manual protein sequence alignment 2005/03/15
- From: Michal Kurowski <>
Re: [modeller_usage] Regarding manual protein sequence alignment 2005/03/15
- From: "Luis Rosales" <>
Re: [modeller_usage] Regarding manual protein sequence alignment 2005/03/15
- From: "Luis Rosales" <>
[modeller_usage] Thanks to our groups for quick response 2005/03/15
- From: rajesh rengaraj <>
[modeller_usage] version 6 and 7 scripts 2005/03/16
- From: "Paula R. Kuser Falcão" <>
Re: [modeller_usage] version 6 and 7 scripts 2005/03/16
- From: Modeller Caretaker <>
[modeller_usage] how can i apply 'rsr' file for optimisation of my model 2005/03/16
- From: "apurba kumar samal" <>
[modeller_usage] USING OF RESTRAIN FILE 'RSR' FOR OPTIMISATION OF MODEL 2005/03/16
- From: "apurba kumar samal" <>
[modeller_usage] Re: modeller_usage Digest, Vol 4, Issue 21 2005/03/17
- From: "drugdesign" <>
[modeller_usage] Allocate error 494-reg 2005/03/17
- From: Elavazhagan <>
Re: [modeller_usage] Allocate error 494-reg 2005/03/17
- From: Modeller Caretaker <>
[modeller_usage] help 2005/03/18
- From: arul prakasam <>
[modeller_usage] work help 2005/03/18
- From: "randy garmon" <>
[modeller_usage] regarding Interaction Energy... 2005/03/20
- From: "Himanshu Grover" <>
Re: [modeller_usage] regarding Interaction Energy... 2005/03/20
- From: Modeller Caretaker <>
[modeller_usage] Problems modelling sections of sequence on different templates 2005/03/20
- From:
[modeller_usage] dear modeller 2005/03/23
- From: arul prakasam <>
[modeller_usage] NOC (current version 1.5.2.10) a new, free program for protein structure model-building, visualization, validation and analysis ... 2005/03/24
- From: "Chenmengen" <>
[modeller_usage] Problem with modeller7v7 2005/03/25
- From: Magali Cottevieille <>
Re: [modeller_usage] Problem with modeller7v7 2005/03/25
- From: Modeller Caretaker <>
[modeller_usage] dear modeller 2005/03/27
- From: arul prakasam <>
[modeller_usage] TYROSINE KINASE HOMOLOGY MODELLING 2005/03/29
- From: "Obdulia Rabal" <>
[modeller_usage] request 2005/04/04
- From: "selvaraj manikandan mani" <>
[modeller_usage] question re. Modeller6v2 (re. fold) 2005/04/04
- From: Vicente Reyes <>
[modeller_usage] Same coordinates 2005/04/08
- From: "Joanne Hanna" <>
[modeller_usage] (no subject) 2005/04/08
- From: Michael Grabe <>
[modeller_usage] problem! 2005/04/09
- From: vivek sharma <>
[modeller_usage] tutorial on mod7v7 2005/04/11
- From: "Paula R. Kuser Falcão" <>
Re: [modeller_usage] tutorial on mod7v7 2005/04/11
- From: Modeller Caretaker <>
[modeller_usage] potassium ion 2005/04/13
- From: fredrik <>
Re: [modeller_usage] potassium ion 2005/04/13
- From: Modeller Caretaker <>
[modeller_usage] (no subject) 2005/04/13
- From: Michael Grabe <>
Re: [modeller_usage] potassium ion 2005/04/14
- From: Fredrik <>
[modeller_usage] Modelling Hydrogen bond in helix 2005/04/17
- From: Panapat Uawithya <>
[modeller_usage] joining of the same domain 2005/04/18
- From: rathankar rao <>
[modeller_usage] Modeller 8v0 release 2005/04/18
- From: Modeller Caretaker <>
Re: [modeller_usage] potassium ion 2005/04/18
- From: Modeller Caretaker <>
[modeller_usage] Python interpreter with Modeller 8v0 2005/04/22
- From:
Re: [modeller_usage] Python interpreter with Modeller 8v0 2005/04/22
- From: Modeller Caretaker <>
[modeller_usage] prb encountered, plz help 2005/04/24
- From: rathankar rao <>
Re: [modeller_usage] prb encountered, plz help 2005/04/24
- From: Modeller Caretaker <>
[modeller_usage] pick.atoms 2005/04/25
- From: jean-marc vuissoz <>
Re: [modeller_usage] pick.atoms 2005/04/25
- From: Modeller Caretaker <>
[modeller_usage] An error with final_malign3d 2005/04/25
- From: Mensur Dlakic <>
[modeller_usage] Re: An error with final_malign3d 2005/04/25
- From: Modeller Caretaker <>
[modeller_usage] Multidomain protein 2005/04/26
- From: Ranjit Kumar <>
[modeller_usage] Loops 2005/04/26
- From: John Penniston <>
[modeller_usage] MODELER v6.3 script 2005/04/27
- From: "O'MAHONY, BRIAN" <>
Re: [modeller_usage] MODELER v6.3 script 2005/04/27
- From: Modeller Caretaker <>
Re: [modeller_usage] Loops 2005/04/27
- From: Modeller Caretaker <>
[modeller_usage] model refinement and assessment 2005/04/28
- From: "Stephen A. Smith" <>
Re: [modeller_usage] model refinement and assessment 2005/04/28
- From: Modeller Caretaker <>
[modeller_usage] heteroatom 2005/05/08
- From: arul prakasam <>
[modeller_usage] tetramers in symmetry 2005/05/09
- From: "hchoe" <>
Re: [modeller_usage] tetramers in symmetry 2005/05/09
- From: Modeller Caretaker <>
[modeller_usage] absolute position restraints 2005/05/10
- From: "Frank Böckler" <>
[modeller_usage] (no subject) 2005/05/11
- From: "Manish Datt" <>
Re: [modeller_usage] (no subject) 2005/05/11
- From: Modeller Caretaker <>
[modeller_usage] bus error 2005/05/11
- From: <>
Re: [modeller_usage] bus error 2005/05/12
- From: Modeller Caretaker <>
[modeller_usage] segmentation fault 2005/05/13
- From: <>
[modeller_usage] modv8.0 on amd64 2005/05/13
- From: Kim Branson <>
RE: [modeller_usage] modv8.0 on amd64 2005/05/14
- From: "Spero Manolatos" <>
Re: [modeller_usage] modv8.0 on amd64 2005/05/14
- From: Modeller Caretaker <>
[modeller_usage] forcing alignment of particular residues 2005/05/16
- From:
Re: [modeller_usage] forcing alignment of particular residues 2005/05/17
- From: Modeller Caretaker <>
Re: [modeller_usage] segmentation fault 2005/05/17
- From: Modeller Caretaker <>
Re: [modeller_usage] absolute position restraints 2005/05/17
- From: Modeller Caretaker <>
Re: [modeller_usage] modv8.0 on amd64 2005/05/18
- From: Modeller Caretaker <>
Re: [modeller_usage] modv8.0 on amd64 2005/05/18
- From: Kim Branson <>
[modeller_usage] Spatial restraints as "flat bottom" potential 2005/05/19
- From: Esben Jannik Bjerrum <>
Re: [modeller_usage] Spatial restraints as "flat bottom" potential 2005/05/19
- From: Modeller Caretaker <>
[modeller_usage] Problem about tutorial (Iterative Example) 2005/05/19
- From: "Jianying (Julia) Ding" <>
[modeller_usage] (no subject) 2005/05/20
- From: Michael Grabe <>
Re: [modeller_usage] Problem about tutorial (Iterative Example) 2005/05/20
- From: Modeller Caretaker <>
[modeller_usage] multiple templates 2005/05/21
- From: Swagatam Ray <>
[modeller_usage] model8v0 2005/05/24
- From: bu weiming <>
Re: [modeller_usage] model8v0 2005/05/24
- From: Modeller Caretaker <>
[modeller_usage] dihedral restraints 2005/05/24
- From: Judy Barnett-Norris <>
[modeller_usage] heme moiety of CYP450 2005/05/25
- From: "O'MAHONY, BRIAN" <>
[modeller_usage] modeller 8v0 on Centos4 (aka RHEL 4) 2005/05/27
- From: Ezequiel H Panepucci <>
Re: [modeller_usage] modeller 8v0 on Centos4 (aka RHEL 4) 2005/05/27
- From: Modeller Caretaker <>
[modeller_usage] signif_cutoff 2005/05/27
- From: Jean-Marc Vuissoz <>
[modeller_usage] problem with modeller 2005/05/30
- From:
Re: [modeller_usage] heme moiety of CYP450 2005/05/30
- From: Modeller Caretaker <>
Re: [modeller_usage] problem with modeller 2005/05/30
- From: Modeller Caretaker <>
Re: [modeller_usage] dihedral restraints 2005/05/30
- From: Modeller Caretaker <>
[modeller_usage] modeling a complex 2005/06/03
- From: Edoardo Saccenti <>
[modeller_usage] Clustering 2005/06/04
- From: John Penniston <>
[modeller_usage] Glycosylation on Asn 2005/06/05
- From: "John Simms" <>
Re: [modeller_usage] Glycosylation on Asn 2005/06/06
- From: Modeller Caretaker <>
[modeller_usage] Python command 2005/06/07
- From: John Penniston <>
Re: [modeller_usage] Python command 2005/06/07
- From: Modeller Caretaker <>
[modeller_usage] Modelling a nucleic acid ligand present in the PDB file 2005/06/08
- From: Charlotte HABEGGER-POLOMAT <>
[modeller_usage] array too small 2005/06/08
- From: John Penniston <>
Re: [modeller_usage] array too small 2005/06/08
- From: Modeller Caretaker <>
Re: [modeller_usage] array too small 2005/06/10
- From: John Penniston <>
Re: [modeller_usage] array too small 2005/06/10
- From: Modeller Caretaker <>
[modeller_usage] problems with modeller 2005/06/16
- From:
[modeller_usage] Pick Restraints 2005/06/16
- From: John Penniston <>
Re: [modeller_usage] Pick Restraints 2005/06/16
- From: Modeller Caretaker <>
[modeller_usage] not generating pdb files 2005/06/16
- From:
[modeller_usage] Modeller 8v1 release 2005/06/20
- From: Modeller Caretaker <>
Re: [modeller_usage] not generating pdb files 2005/06/22
- From: Modeller Caretaker <>
[modeller_usage] Modeling DNA 2005/06/22
- From: Lucas Bleicher <>
Re: [modeller_usage] Modeller 8v1 release 2005/06/22
- From: "Peter C. Lai" <>
Re: [modeller_usage] Modeller 8v1 release 2005/06/22
- From: "Peter C. Lai" <>
[modeller_usage] N-terminal acetylation via 'automodel?' ? 2005/06/23
- From: "Niels Johan Christensen" <>
[modeller_usage] disulfide bonds 2005/06/23
- From: Dmitry Osolodkin <>
Re: [modeller_usage] Modeling DNA 2005/06/23
- From: Mensur Dlakic <>
[modeller_usage] Incorrect Topology library? 2005/06/23
- From: "Jeff Bush" <>
[modeller_usage] Homology model at specific pH 2005/06/23
- From: Panapat Uawithya <>
Re: [modeller_usage] N-terminal acetylation via 'automodel?' ? 2005/06/24
- From: Modeller Caretaker <>
[modeller_usage] Re: your message in Modeller user list. 2005/06/24
- From: Ezequiel H Panepucci <>
[modeller_usage] Terminal patching (acetylation/amidation) in Modeller 7.7 2005/06/24
- From: "Niels Johan Christensen" <>
Re: [modeller_usage] Terminal patching (acetylation/amidation) in Modeller 7.7 2005/06/24
- From: Modeller Caretaker <>
Re: [modeller_usage] Incorrect Topology library? 2005/06/24
- From: Modeller Caretaker <>
[modeller_usage] violation of restraints 2005/06/24
- From: "Marsita M" <>
[modeller_usage] problem! 2005/06/25
- From: vivek sharma <>
Re: [modeller_usage] violation of restraints 2005/06/25
- From: Modeller Caretaker <>
Re: [modeller_usage] problem! 2005/06/25
- From: Modeller Caretaker <>
Re: [modeller_usage] problem! 2005/06/26
- From: vivek sharma <>
[modeller_usage] no alignment 2005/06/26
- From: Arnout Voet <>
Re: [modeller_usage] no alignment 2005/06/26
- From: Modeller Caretaker <>
[modeller_usage] NOC 2.0 released 2005/06/27
- From: "Chenmengen" <>
Re: [modeller_usage] Terminal patching (acetylation/amidation) in Modeller 7.7 2005/06/27
- From: Modeller Caretaker <>
[modeller_usage] Some theoretical questions 2005/06/30
- From: Dmitry Osolodkin <>
Re: [modeller_usage] Some theoretical questions 2005/06/30
- From: Modeller Caretaker <>
[modeller_usage] adding loops while retaining template structure 2005/07/06
- From: "Peter C. Lai" <>
[modeller_usage] alignment file? 2005/07/06
- From: Rozana Othman <>
Re: [modeller_usage] alignment file? 2005/07/07
- From: Modeller Caretaker <>
[modeller_usage] determination of symmetry 2005/07/09
- From: rathankar rao <>
[modeller_usage] mutant protein 2005/07/11
- From: "silefra\@libero\.it" <>
Re: [modeller_usage] determination of symmetry 2005/07/11
- From: Modeller Caretaker <>
[modeller_usage] Modelling Molybdenum atom 2005/07/12
- From: belal najjar <>
Re: [modeller_usage] Modelling Molybdenum atom 2005/07/12
- From: Modeller Caretaker <>
[modeller_usage] allhydrogen model and nselat error 2005/07/12
- From: Starr Hazard <>
[modeller_usage] Modeller 8v1 on x86_64 2005/07/12
- From: Jarrod Smith <>
Re: [modeller_usage] allhydrogen model and nselat error 2005/07/13
- From: Modeller Caretaker <>
Re: [modeller_usage] Modeller 8v1 on x86_64 2005/07/13
- From: Modeller Caretaker <>
Re: [modeller_usage] allhydrogen model and nselat error 2005/07/14
- From: Starr Hazard <>
[modeller_usage] mod8v1: command not found 2005/07/14
- From: Bo Yang <>
Re: [modeller_usage] mod8v1: command not found 2005/07/14
- From: Modeller Caretaker <>
[modeller_usage] Newbie question : restraining secondary structure 2005/07/17
- From: Parantu Shah <>
Re: [modeller_usage] Newbie question : restraining secondary structure 2005/07/17
- From: Modeller Caretaker <>
[modeller_usage] Re: Newbie question : restraining secondary structure 2005/07/17
- From: "Frederico Arnoldi" <>
[modeller_usage] Restraining structure to Alpha 2005/07/20
- From: John Penniston <>
[modeller_usage] Correction- Restraining structure to Alpha 2005/07/20
- From: John Penniston <>
Re: [modeller_usage] Restraining structure to Alpha 2005/07/20
- From: Modeller Caretaker <>
[modeller_usage] restraint violations files 2005/07/25
- From: "Maria Turano" <>
[modeller_usage] modelling multiple loops 2005/07/26
- From: "David L. Bostick" <>
Re: [modeller_usage] modelling multiple loops 2005/07/26
- From: Modeller Caretaker <>
Re: [modeller_usage] modelling multiple loops 2005/07/27
- From: "David L. Bostick" <>
Re: [modeller_usage] modelling multiple loops 2005/07/27
- From: Modeller Caretaker <>
[modeller_usage] Hydrophobic restraints question 2005/07/29
- From: <>
[modeller_usage] loop modelling 2005/08/04
- From: Judy Barnett-Norris <>
Re: [modeller_usage] loop modelling 2005/08/04
- From: Modeller Caretaker <>
[modeller_usage] Modeller 8 forrtl severe 157 2005/08/04
- From: Rodrigo Reston <>
Re: [modeller_usage] Modeller 8 forrtl severe 157 2005/08/04
- From: Modeller Caretaker <>
[modeller_usage] Error: Unable to open alignment file 2005/08/08
- From: "Amin Momin" <>
Re: [modeller_usage] Hydrophobic restraints question 2005/08/08
- From: Modeller Caretaker <>
[modeller_usage] modeller usage 2005/08/09
- From: Guido Leoni <>
[modeller_usage] crsplin_223E> Internal error: array too small: MAXSPL current maximum, current need: 400 420. 2005/08/23
- From: Guido Leoni <>
[modeller_usage] 2005/08/26
- From: sankari thirumal <>
[modeller_usage] template pdb file has no header 2005/08/26
- From: Akansha Saxena <>
Re: [modeller_usage] template pdb file has no header 2005/08/26
- From: Modeller Caretaker <>
Re: [modeller_usage] crsplin_223E> Internal error: array too small: MAXSPL current maximum, current need: 400 420. 2005/08/26
- From: Modeller Caretaker <>
[modeller_usage] profile files 2005/09/01
- From: "Jason M Walraven" <>
[modeller_usage] Internal error: array too small 2005/09/01
- From: "hchoe" <>
Re: [modeller_usage] Internal error: array too small 2005/09/01
- From: Modeller Caretaker <>
[modeller_usage] Tutorial for beginners? 2005/09/05
- From: Antonio Arroyo Luque <>
Re: [modeller_usage] Tutorial for beginners? 2005/09/05
- From: Modeller Caretaker <>
Re: [modeller_usage] Tutorial for beginners? 2005/09/06
- From: Karsten Suhre <>
[modeller_usage] Nucleic acid-protein complexe 2005/09/07
- From: Charlotte Habegger-Polomat <>
[modeller_usage] What I'm doing wrong? 2005/09/08
- From: Antonio Arroyo Luque <>
Re: [modeller_usage] What I'm doing wrong? 2005/09/08
- From: "Peter C. Lai" <>
[modeller_usage] Re: modeller_usage Digest, Vol 4, Issue 75 2005/09/08
- From: rathankar rao <>
[modeller_usage] difficulty in modelllllling a chimeric protein, plz help 2005/09/09
- From: rathankar rao <>
[modeller_usage] structure not read in 2005/09/12
- From: sankari thirumal <>
[modeller_usage] Building tetramers 2005/09/12
- From: Cesar Luis Avila <>
[modeller_usage] structure not read in 2005/09/13
- From: sankari thirumal <>
[modeller_usage] question about basic modelling 2005/09/14
- From: Mehmet Serkan Apaydin <>
Re: [modeller_usage] question about basic modelling 2005/09/14
- From: Eric Bennett <>
[modeller_usage] Error on Alpha Unix 2005/09/14
- From: Ricardo Nicoluci <>
Re: [modeller_usage] Error on Alpha Unix 2005/09/14
- From: Modeller Caretaker <>
Re: [modeller_usage] Error on Alpha Unix 2005/09/15
- From: Ricardo Nicoluci <>
[modeller_usage] Repeating basic tutorial with my protein - stuck at malign3d step 2005/09/16
- From: Charlotte Habegger-Polomat <>
[modeller_usage] backbone trace and sidechains 2005/09/16
- From: Mehmet Serkan Apaydin <>
[modeller_usage] sequence alignment of pdb file with missing residues 2005/09/19
- From: Andy Arvai <>
[modeller_usage] Problems with cis proline 2005/09/21
- From: Eva María Priego <>
Re: [modeller_usage] sequence alignment of pdb file with missing residues] 2005/09/21
- From: Charlotte Habegger-Polomat <>
Re: [modeller_usage] Repeating basic tutorial with my protein - stuck at malign3d step 2005/09/21
- From: Charlotte Habegger-Polomat <>
Re: [modeller_usage] Problems with cis proline 2005/09/21
- From: Modeller Caretaker <>
[modeller_usage] problem in modelling 2005/09/22
- From: rathankar rao <>
Re: [modeller_usage] sequence alignment of pdb file with missing residues] 2005/09/22
- From: Charlotte Habegger-Polomat <>
Re: [modeller_usage] problem in modelling 2005/09/22
- From: Modeller Caretaker <>
Re: [modeller_usage] Repeating basic tutorial with my protein - stuck at malign3d step 2005/09/22
- From: Modeller Caretaker <>
[modeller_usage] Converting (old) top script to (new) python ones 2005/09/23
- From: Eric Hajjar <>
Re: [modeller_usage] Converting (old) top script to (new) python ones 2005/09/23
- From: Modeller Caretaker <>
[modeller_usage] Problems with mod8v1 2005/09/25
- From: "Elza Helena Andrade Barbosa" <>
Re: [modeller_usage] Problems with mod8v1 2005/09/25
- From: Modeller Caretaker <>
[modeller_usage] Hi 2005/09/26
- From: "zhurx" <>
[modeller_usage] Hi 2005/09/26
- From: "zhurx" <>
Re: [modeller_usage] Hi 2005/09/26
- From: "Peter C. Lai" <>
[modeller_usage] symmetry in automodel 2005/09/26
- From: Gordon Wells <>
Re: [modeller_usage] Hi 2005/09/26
- From: Modeller Caretaker <>
Re: [modeller_usage] Problems with mod8v1 2005/09/26
- From: Modeller Caretaker <>
[modeller_usage] Question 2005/09/27
- From:
[modeller_usage] Python Modeller Script 2005/09/27
- From: Ricardo Nicoluci <>
Re: [modeller_usage] Python Modeller Script 2005/09/27
- From: Modeller Caretaker <>
Re: [modeller_usage] symmetry in automodel 2005/09/27
- From: Modeller Caretaker <>
Fwd: [modeller_usage] Python Modeller Script 2005/09/30
- From: Ricardo Nicoluci <>
[modeller_usage] modeling of transmembrane proteins 2005/10/03
- From: Akansha Saxena <>
[modeller_usage] Modelling nucleic acids 2005/10/04
- From:
[modeller_usage] modelling of complexes 2005/10/04
- From: Arnout Voet <>
Re: [modeller_usage] Modelling nucleic acids 2005/10/04
- From: Charlotte Habegger-Polomat <>
Re: [modeller_usage] modeling of transmembrane proteins 2005/10/04
- From: Modeller Caretaker <>
Re: [modeller_usage] Modelling nucleic acids 2005/10/05
- From:
[modeller_usage] DOPE score 2005/10/05
- From: Leyla Celik <>
Re: [modeller_usage] DOPE score 2005/10/05
- From: Modeller Caretaker <>
[modeller_usage] No optimization 2005/10/05
- From: mathieu coincon <>
Re: [modeller_usage] No optimization 2005/10/05
- From: "Peter C. Lai" <>
[modeller_usage] Re: modeller_usage Digest, Vol 4, Issue 90 2005/10/05
- From: "Prabhakar. G." <>
Re: [modeller_usage] No optimization 2005/10/06
- From: Modeller Caretaker <>
Re: [modeller_usage] No optimization 2005/10/06
- From: "Peter C. Lai" <>
[modeller_usage] Re: plotting with GNU 2005/10/07
- From: "Prabhakar. G." <>
[modeller_usage] how to create .ali file 2005/10/10
- From: sankari thirumal <>
[modeller_usage] File not found 2005/10/10
- From: Ricardo Nicoluci <>
[modeller_usage] (sans objet) 2005/10/10
- From: "Riadh HAMMAMI" <>
[modeller_usage] Re: 2005/10/10
- From: Ricardo Nicoluci <>
Re: [modeller_usage] Re: 2005/10/10
- From: Modeller Caretaker <>
Re: [modeller_usage] Re: 2005/10/10
- From: Ricardo Nicoluci <>
[modeller_usage] model-segment.py problem 2005/10/11
- From: Guido Leoni <>
[modeller_usage] (sans objet) 2005/10/11
- From: "Riadh HAMMAMI" <>
[modeller_usage] RE:model-segment.py 2005/10/11
- From: "Riadh HAMMAMI" <>
Re: [modeller_usage] model-segment.py problem 2005/10/11
- From: Modeller Caretaker <>
[modeller_usage] howto reverse polarity 2005/10/13
- From: "Peter C. Lai" <>
RE: [modeller_usage] howto reverse polarity 2005/10/13
- From: Roberto Sanchez <>
[modeller_usage] PSC WORKSHOP: COMPUTATIONAL BIOPHYSICS WORKSHOP 2005/10/14
- From: Troy Wymore <>
[modeller_usage] error when trying to set MDT_LIB_FILE and BIN_LIB_FILE 2005/10/19
- From: Daniel Rigden <>
Re: [modeller_usage] error when trying to set MDT_LIB_FILE and BIN_LIB_FILE 2005/10/19
- From: Modeller Caretaker <>
[modeller_usage] multiple protein conformations 2005/10/20
- From:
[modeller_usage] chain 2005/10/22
- From: "PARVINI" <>
[modeller_usage] problem with modelling a non-template helix 2005/10/25
- From: "Renée Vancraenenbroeck" <>
Re: [modeller_usage] problem with modelling a non-template helix 2005/10/25
- From: Modeller Caretaker <>
[modeller_usage] constrain template secondary structure in energy minimization/loop building 2005/10/27
- From: Frank Peelman <>
[modeller_usage] model assessment method 2005/11/01
- From: "서주현"<>
[modeller_usage] Question running script on cluster 2005/11/01
- From:
Re: [modeller_usage] model assessment method 2005/11/01
- From: Modeller Caretaker <>
Re: [modeller_usage] Question running script on cluster 2005/11/01
- From: Modeller Caretaker <>
[modeller_usage] Re: model assessment method 2005/11/01
- From: Mensur Dlakic <>
Re: [modeller_usage] Re: model assessment method 2005/11/01
- From: Modeller Caretaker <>
[modeller_usage] topology for nicotine 2005/11/01
- From: Hai-long Wang <>
[modeller_usage] Refinement of part of model 2005/11/02
- From: "Matt wagner" <>
[modeller_usage] add new residue type 2005/11/02
- From: Hai-long Wang <>
Re: [modeller_usage] Refinement of part of model 2005/11/02
- From: Modeller Caretaker <>
[modeller_usage] error 2005/11/03
- From: sankari thirumal <>
[modeller_usage] Modeling multiple domains 2005/11/03
- From:
[modeller_usage] Builing models with big distances 2005/11/09
- From: Fabio Passetti <>
[modeller_usage] Problems w/ rand_seed for Mod8v1 2005/11/16
- From:
Re: [modeller_usage] Problems w/ rand_seed for Mod8v1 2005/11/16
- From: Modeller Caretaker <>
[modeller_usage] modeller 2005/11/18
- From: "Renée Vancraenenbroeck" <>
[modeller_usage] The assessment of protein model with the function in modeller 8.1 2005/11/21
- From: "서주현"<>
[modeller_usage] import site failed error 2005/11/21
- From: "S.Sundar Raman" <>
[modeller_usage] Incorrect Number or residues/Starting position 2005/11/21
- From: "Kevin Galens \(RIT Student\)" <>
Re: [modeller_usage] import site failed error 2005/11/21
- From: Modeller Caretaker <>
Re: [modeller_usage] The assessment of protein model with the function in modeller 8.1 2005/11/21
- From: Modeller Caretaker <>
Re: [modeller_usage] Incorrect Number or residues/Starting position 2005/11/21
- From: Modeller Caretaker <>
[modeller_usage] Loop redefine on tetramer 2005/11/24
- From:
[modeller_usage] Dope Gnu Plot 2005/11/25
- From: Mattias de Hollander <>
Re: [modeller_usage] Loop redefine on tetramer 2005/11/25
- From: Modeller Caretaker <>
Re: [modeller_usage] Dope Gnu Plot 2005/11/25
- From: Modeller Caretaker <>
[modeller_usage] max number of optima in resdih.lib 2005/11/29
- From: Luis Gracia <>
[modeller_usage] How many models to generate? 2005/11/30
- From: Charlotte Habegger-Polomat <>
[modeller_usage] Occupancy problem ? 2005/12/02
- From: "Nicolas" <>
[modeller_usage] restrain beta strands and plates 2005/12/02
- From: Arnout Voet <>
[modeller_usage] RE: How many models to generate? 2005/12/02
- From: "Frederico Arnoldi" <>
Re: [modeller_usage] RE: How many models to generate? 2005/12/02
- From: Charlotte Habegger-Polomat <>
Re: [modeller_usage] max number of optima in resdih.lib 2005/12/02
- From: Modeller Caretaker <>
Re: [modeller_usage] Occupancy problem ? 2005/12/02
- From: Modeller Caretaker <>
Re: [modeller_usage] restrain beta strands and plates 2005/12/02
- From: Modeller Caretaker <>
[modeller_usage] How to choose the best model? 2005/12/02
- From:
[modeller_usage] Re: modeller_usage Digest, Vol 4, Issue 107 2005/12/02
- From: rathankar rao <>
Re: [modeller_usage] How to choose the best model? 2005/12/03
- From: "��¨Ե��ط�� Ե��͹��" <>
[modeller_usage] The large gap on sequence is a big problem 2005/12/03
- From: "��¨Ե��ط�� Ե��͹��" <>
[modeller_usage] dynamic memory allocation failed 2005/12/04
- From: Ilya Shlyakhter <>
Re: [modeller_usage] dynamic memory allocation failed 2005/12/05
- From: Modeller Caretaker <>
[modeller_usage] loops iterations and various DOPE scores 2005/12/06
- From: Starr Hazard <>
Re: [modeller_usage] loops iterations and various DOPE scores 2005/12/06
- From: Modeller Caretaker <>
[modeller_usage] General Homolgy question 2005/12/07
- From: "Yogesh Sabnis" <>
Re: [modeller_usage] The large gap on sequence is a big problem 2005/12/07
- From: Charlotte Habegger-Polomat <>
Re: [modeller_usage] How to choose the best model? 2005/12/07
- From: Charlotte Habegger-Polomat <>
[modeller_usage] How to include alignment to model_symmetry_define() 2005/12/07
- From:
Re: [modeller_usage] How to include alignment to model_symmetry_define() 2005/12/07
- From: Modeller Caretaker <>
Re: [modeller_usage] How to choose the best model? 2005/12/07
- From:
Re: [modeller_usage] loops iterations and various DOPE scores 2005/12/08
- From: Starr Hazard <>
[modeller_usage] file name problem 2005/12/08
- From: Starr Hazard <>
Re: [modeller_usage] file name problem 2005/12/08
- From: Modeller Caretaker <>
[modeller_usage] Re: To Model missing domains in the content of the rest 2005/12/08
- From: Shirley Li <>
[modeller_usage] To use separate templates for different region of a protein 2005/12/08
- From: Shirley Li <>
Re: [modeller_usage] Re: To Model missing domains in the content of the rest 2005/12/08
- From: Modeller Caretaker <>
Re: [modeller_usage] loops iterations and various DOPE scores 2005/12/08
- From: Modeller Caretaker <>
[modeller_usage] Re: modeller_usage Digest, Vol 4, Issue 113 2005/12/09
- From: rathankar rao <>
[modeller_usage] beta-sheets and alpha-helixes 2005/12/13
- From: "Matthias Negri" <>
[modeller_usage] is LOOP threading a common result? 2005/12/14
- From: Starr Hazard <>
Re: [modeller_usage] beta-sheets and alpha-helixes 2005/12/14
- From: Modeller Caretaker <>
Re: [modeller_usage] is LOOP threading a common result? 2005/12/14
- From: Modeller Caretaker <>
[modeller_usage] Loop model selection 2005/12/15
- From:
[modeller_usage] DOPE Score 2005/12/16
- From: Mattias de Hollander <>
[modeller_usage] modelling loops with nmr restraints 2005/12/16
- From:
[modeller_usage] (no subject) 2005/12/18
- From: "mahboobeh zarrabi" <>
[modeller_usage] what i am doing wrong? 2005/12/24
- From: Anna Kaczynska <>
[modeller_usage] out_put directory 2005/12/27
- From: doppelt olivia <>
Re: [modeller_usage] out_put directory 2005/12/28
- From: Modeller Caretaker <>

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