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Hello,
I havealigned two sequences and want to modelise
one of them. I applied to my file all the previous suggestions evoqued in the
archive (SET OUTPUT_CONTROL = 1 1 1 1 1, corrected the format of my
PIR alignement). Yet I still get the same error message.
When I try to check my alignement, i also get this
message.
Does any body have any idea?
here is the output
TOP_________> 109 749 SET
ALNFILE = 'ali.pir'
TOP_________> 110 750 SET KNOWNS = '1ayx' TOP_________> 111 751 SET SEQUENCE = 'KPB1' TOP_________> 112 752 SET STARTING_MODEL = 1 TOP_________> 113 753 SET ENDING_MODEL = 5 TOP_________> 114 754 CALL ROUTINE = 'model' TOP_________> 115 419 CALL ROUTINE = 'getnames' TOP_________> 116 534 STRING_IF STRING_ARGUMENTS = MODEL 'undefined', OPERATION; = 'EQ', THEN = 'STRING_OPERATE OPERATION = CONCATENA; TE, STRING_ARGUMENTS = SEQUENCE .ini, RESULT = MODEL' TOP_________> 117 535 STRING_IF STRING_ARGUMENTS = CSRFILE 'undefined', OPERATI; ON = 'EQ', THEN = 'STRING_OPERATE OPERATION = CONCATE; NATE, STRING_ARGUMENTS = SEQUENCE .rsr, RESULT = CSRFILE; ' TOP_________> 118 536 STRING_OPERATE OPERATION = 'CONCATENATE', ; STRING_ARGUMENTS = SEQUENCE '.sch', RESULT = SCHFILE TOP_________> 119 537 STRING_OPERATE OPERATION = 'CONCATENATE', ; STRING_ARGUMENTS = SEQUENCE '.mat', RESULT = MATRIX_FI; LE TOP_________> 120 538 SET ROOT_NAME = SEQUENCE TOP_________> 121 539 RETURN TOP_________> 122 420 CALL ROUTINE = 'homcsr' TOP_________> 123 112 READ_ALIGNMENT FILE = ALNFILE, ALIGN_CODES = KNOWNS SEQUE; NCE Dynamically allocated memory
at amaxseq
[B,kB,MB]:
84067 82.097
0.080
openf5__224_> Open 20 OLD SEQUENTIAL ali.pir Dynamically allocated memory
at amaxbnd
[B,kB,MB]: 8049459
7860.800 7.677
openf5__224_> Open 20 OLD SEQUENTIAL ali.pir Read the alignment from
file : ali.pir
Total number of alignment positions: 500 #
Code #_Res #_Segm
PDB_code
Name
------------------------------------------------------------------------------- 1 1ayx 446 1 glucoamlyse 2 KPB1 394 1 alpha subun TOP_________> 124 113 STRING_IF STRING_ARGUMENTS = TOP_VERSION 'accelrys', OPER; ATION = 'ne', THEN = 'GO_TO __ACCELRYS1' TOP_________> 125 117 CHECK_ALIGNMENT check_a_343_> >> BEGINNING OF COMMAND check_a_337E> Structure not read in: 1 recover____E> ERROR_STATUS >= STOP_ON_ERROR: 1 1 |