hai dear modeller
while running the modeller i got the error below can u
suggest me how to rectify
thanking you
MODELLER 7v7, Sep 12, 2004 09:15pm
PROTEIN STRUCTURE MODELLING BY SATISFACTION OF
SPATIAL RESTRAINTS
Copyright(c) 1989-2004 Andrej
Sali
All Rights Reserved
Written by A. Sali
with help from
B. Webb, M.S. Madhusudhan, M-Y. Shen, M.A.
Marti-Renom,
N. Eswar, F. Alber, B. Oliva, A.
Fiser,
R. Sanchez, B. Yerkovich, A.
Badretdinov,
F. Melo, J.P. Overington, E.
Feyfant
University of California, San
Francisco, USA
Rockefeller University, New York,
USA
Harvard University, Cambridge,
USA
Imperial Cancer Research Fund,
London, UK
Birkbeck College, University of London,
London, UK
Kind, OS, HostName, Kernel, Processor: 4, Linux hcl4
2.4.20-8 i686
Date and time of compilation : 09/12/2004
21:24:59
Job starting time (YY/MM/DD HH:MM:SS): 2005/03/18
16:25:06.597
TOP_________> 109 749 SET ALNFILE =
'alignment.ali'
TOP_________> 110 750 SET KNOWNS = 'pdb1lox'
TOP_________> 111 751 SET SEQUENCE = 'HUMAN'
TOP_________> 112 752 SET STARTING_MODEL = 1
TOP_________> 113 753 SET ENDING_MODEL = 1
TOP_________> 114 754 CALL ROUTINE = 'model'
TOP_________> 115 419 CALL ROUTINE = 'getnames'
TOP_________> 116 534 STRING_IF STRING_ARGUMENTS =
MODEL 'undefined', OPERATI
ON;
= 'EQ', THEN =
'STRING_OPERATE OPERATION = CONCATENA;
TE, STRING_ARGUMENTS = SEQUENCE
.ini, RESULT = MODEL'
TOP_________> 117 535 STRING_IF STRING_ARGUMENTS =
CSRFILE 'undefined', OPERA
TI;
ON = 'EQ', THEN =
'STRING_OPERATE OPERATION = CONCATE;
NATE, STRING_ARGUMENTS =
SEQUENCE .rsr, RESULT = CSRFILE;
'
TOP_________> 118 536 STRING_OPERATE OPERATION =
'CONCATENATE',
;
STRING_ARGUMENTS = SEQUENCE
'.sch', RESULT = SCHFILE
TOP_________> 119 537 STRING_OPERATE OPERATION =
'CONCATENATE',
;
STRING_ARGUMENTS = SEQUENCE
'.mat', RESULT = MATRIX_FI;
LE
TOP_________> 120 538 SET ROOT_NAME = SEQUENCE
TOP_________> 121 539 RETURN
TOP_________> 122 420 CALL ROUTINE = 'homcsr'
TOP_________> 123 112 READ_ALIGNMENT FILE =
ALNFILE, ALIGN_CODES = KNOWNS SEQ
UE;
NCE
Dynamically allocated memory at amaxseq
[B,kB,MB]: 84067 82.
097 0.080
openf5__224_> Open 20 OLD SEQUENTIAL
alignment.ali
openf5__224_> Open 13 OLD SEQUENTIAL
./pdb1lox.pdb
Dynamically allocated memory at amaxbnd
[B,kB,MB]: 10758819 10506.
659 10.260
openf5__224_> Open 20 OLD SEQUENTIAL
alignment.ali
openf5__224_> Open 13 OLD SEQUENTIAL
./pdb1lox.pdb
rdpir___648E> Alignment sequence not found in PDB
file: 1 ./pdb1lox.pdb
recover____E> ERROR_STATUS >= STOP_ON_ERROR: 1
1
Dynamically allocated memory at finish
[B,kB,MB]: 10758819 10506.
659 10.260
Starting time
: 2005/03/18 16:25:06.
597
Closing time
: 2005/03/18 16:25:07.
194
Total CPU time [seconds]
: 0.59
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