Subject: [modeller_usage] An error with final_malign3d
From: Mensur Dlakic <>
Date: Mon, 25 Apr 2005 09:34:21 -0600
Cc:
Hi,
This error occurs both with Windows and Linus versions of Modeller 8v0 when
'a.final_malign3d = True' is left in the script file. If this statement is
commented out and the script is otherwise unchanged, it works just fine.
The job gets stopped right at the very end, presumably before the models
are fitted to the template.
Similar thing happens when these two lines are in the script:
mdl = model(env)
mdl.optimize(optimization_method=3, max_iterations=50,
output='REPORT', trace_output=1)
In this case, however, the script dies at the beginning. Again, commenting
out these two statements is all it takes to get the job going. I'll send
the error messages to Ben only, the whole list probably doesn't need to see
them.
Any suggestion/advice is appreciated. Cheers,
Mensur
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| Mensur Dlakic, PhD | Tel: (406) 994-6576 |
| Department of Microbiology | Fax: (406) 994-4926 |
| Montana State University | |
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