O'MAHONY, BRIAN wrote:
I am trying to refine a loop region in my protein using "select atoms". The roblem is I only have the manual for version 4 and many variables have been redefined. Can someone tell me the script or better still send me the manual for version 6.3. I can't find it on the net
You can find the 6v2 manual at http://salilab.org/modeller/6v2/manual/ which should be close enough for your needs. 6v3 was never officially released, so there is no manual available for it.
Ben Webb, Modeller Caretaker -- http://www.salilab.org/modeller/ Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage