[modeller_usage] modv8.0 on amd64

[Kim Branson <>]

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Hi  i'm trying to get the generic unix build of modeller to run on  a 
amd64 bix running fedora core 3. I've had a look at the python paths, 
and played with a few variables.  It would seem the python interpreter 
cannot find the site packages, but imports the modeller addons fine. 
Does anyone have a tip on how to get the embedded python to find the 
site packages?

export PYTHONPATH=/usr/lib64/python2.3/
#export PYTHONHOME=/usr/local/modeller8v0/bin/lib/python2.3
export PYTHONHOME=/usr/lib64/python2.3/


[kbranson@culpeper ~]$ mod8v0 -

                         MODELLER 8v0, Apr 15, 2005 03:15pm

     PROTEIN STRUCTURE MODELLING BY SATISFACTION OF SPATIAL RESTRAINTS


                     Copyright(c) 1989-2005 Andrej Sali
                            All Rights Reserved

                             Written by A. Sali
                               with help from
           B. Webb, M.S. Madhusudhan, M-Y. Shen, M.A. Marti-Renom,
                N. Eswar, F. Alber, M. Topf, B. Oliva, A. Fiser,
                    R. Sanchez, B. Yerkovich, A. Badretdinov,
                      F. Melo, J.P. Overington, E. Feyfant
                 University of California, San Francisco, USA
                    Rockefeller University, New York, USA
                      Harvard University, Cambridge, USA
                   Imperial Cancer Research Fund, London, UK
              Birkbeck College, University of London, London, UK


Kind, OS, HostName, Kernel, Processor: 4, Linux 
culpeper.parkville.hsn.csiro.au 2.6.10-1.766_FC3smp x86_64
Date and time of compilation         : 04/15/2005 15:36:51
MODELLER executable type             : i386-intel8
Job starting time (YY/MM/DD HH:MM:SS): 2005/05/14  11:21:41.002

'import site' failed; use -v for traceback
>>> dir()
['ModellerError', '__builtins__', '__doc__', '__name__', 'alignment', 
'density', 'energy_data', 'environ', 'group_restraints', 'info', 
'io_data', 'libraries', 'log', 'model', 'modfile', 'profile', 
'sequence_db', 'topology', 'util']


Dr Kim Branson
Peter Doherty Fellow
Protein Structure and Function
St Vincents Institute for Medical Research
41 Victoria Parade, Fitzroy
Victoria 3065, Australia.
Phone: +613 9288 2480
Fax: +613 94162 676
Ph +613 9662 7136


www.svi.edu.au
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