Re: [modeller_usage] forcing alignment of particular residues

[Modeller Caretaker <>]

 wrote:
> I'm wondering how to force the align2d procedure to align the sequences to the
> structures, under the constraint that a particular residue be aligned in all
> sequences.  i.e. is there a better way than to split the alignment into two
> alignment procedures?

You can do this with salign or align2d, using fix_offsets. See
http://salilab.org/modeller/manual/node194.html#SECTION008921600000000000000
for an salign example.

	Ben Webb, Modeller Caretaker
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