[modeller_usage] Modelling a nucleic acid ligand present in the PDB file
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Subject: [modeller_usage] Modelling a nucleic acid ligand present in the PDB file
From: Charlotte HABEGGER-POLOMAT <>
Date: Wed, 8 Jun 2005 18:29:20 +0200 (CEST)
Hello!
Having obtained a satisfactory 3D model of my protein
using Modeller with structures known in the PDB for
three homologs, I would like to add a nucleic acid
ligand (a tRNA).
None of the three PDB structures I used contained the
nucleic acid, but I have other PDB files for one of
the three homologs with the same nucleic acid.
In the PDB files for the known protein/nucleic acid
complex, the coordinates for the nucleic acid are not
under HETATM residues but simply as ATOMS after the
protein coordinates.
What would be the simplest way to build a first quick
model of my protein with the tRNA just to get an idea
of the complex?
Thanks for any suggestions!
-Charlotte
(I am originally subscribed under
)
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