We used to have a script for modeller in the old type way. Now we
translated it to python mode, but the function
automodel.generate_method and automodel.rand_method are not working
properly. The following error occurs:
when a.generate_method is activated:
Traceback (most recent call last):
File "mod.py", line 75, in ?
a.make()
# do the actual homology modelling
File "/usr/local/modeller8v1/modlib/modeller/automodel/loopmodel.py", line 28, in make
automodel.make(self, exit_stage)
File "/usr/local/modeller8v1/modlib/modeller/automodel/automodel.py", line 100, in make
self.homcsr(exit_stage)
File "/usr/local/modeller8v1/modlib/modeller/automodel/automodel.py", line 334, in homcsr
self.generate_method(self, aln)
TypeError: 'str' object is not callable
when a.rand_method is activated:
File "mod.py", line 75, in ?
a.make()
# do the actual homology modelling
File "/usr/local/modeller8v1/modlib/modeller/automodel/loopmodel.py", line 28, in make
automodel.make(self, exit_stage)
File "/usr/local/modeller8v1/modlib/modeller/automodel/automodel.py", line 110, in make
self.multiple_models()
File "/usr/local/modeller8v1/modlib/modeller/automodel/loopmodel.py", line 32, in multiple_models
automodel.multiple_models(self)
File "/usr/local/modeller8v1/modlib/modeller/automodel/automodel.py", line 197, in multiple_models
self.single_model(num)
File "/usr/local/modeller8v1/modlib/modeller/automodel/automodel.py", line 210, in single_model
self.rand_method(self)
TypeError: 'str' object is not callable
Also I would like suggestions to the script file that is attached.
Thanks,
-- Ricardo de Paula Nicoluci PhD Student Medicinal Chemistry Laboratory IFSC - University of Sao Paulo Sao Carlos - SP - Brazil