Subject: [modeller_usage] what is the correct alignment
From: "rudra" <>
Date: Thu, 16 Feb 2006 15:31:18 +0530
hi,
i'm new to homology modeling, i was trying to solve a structure by homology
modeling, i want to know what is the correct alignment among these two:
case 1:
template abbadfaclkzcdtcfdgswchc
target aabadaacckzcct----ccghc
secondary structure CCCCCCCHHHHHHHHHHHHHHHH
CLUSTALW * *** ** *** * **
case 2:
template abbadfaclkzcdtcfdgswchc
target aabadaacckzcctccghc----
secondary structure CCCCCCCHHHHHHHHHHHHHHHH
CLUSTALW * *** ** *** **
regards,
rudra