Re: [modeller_usage] nselat__596E> Atom index is out of range (iatm, natm)
To: MGiò <>
Subject: Re: [modeller_usage] nselat__596E> Atom index is out of range (iatm, natm)
From: Modeller Caretaker <>
Date: Tue, 28 Feb 2006 19:44:34 -0800
Cc:
MGiò wrote:
I'm trying and model a 7-helix trans-membrane receptor, as I don't like
the way MODELLER models my helices, while I highly appreciate its loop
modelling, I've been using the "model-myini.py" input script to model my
receptor starting from a initial.pdb containing the 7 helices already
modelled. Every MODELLER run ends with the "nselat__596E> Atom index is
out of range" error. Considering that this error changes the couple of
atoms referring to any time I delete the corresponding residue in order
to by-pass the error. I've attached to the mail the input files I used
and the log file. Can you help me?
You forgot to include your alignment file, so I can't reproduce your
problem, but it may be related to a bug we fixed in the recent Modeller
8v2 release. Please try your script again with Modeller 8v2, and if the
problem remains, send me your input files (with the alignment!) and I'll
take a look.