Dear Sir,
I have question about the hydrogen atom name after building the
all-atom model. After building the all-atom model, the hydrogen name
"HA" means hydrogen bonded to C-alpha, but GLY has two HA, one is 1HA,
the other is 2HA. Which one is correponding to the sidechain in
other residue types? I checked several GLY in my model, I find always
it is 2HA that is corresponding to the side chain of other residue
type. Is this the standard criteria, or just modeller's choice?
Thank you very much!
--
Zhiqiang Ye
PHD candidate