Good Day!!!!!!!!!
I had installed modeller software in my computer. I was practising the
basic commands. I am comfortable till executing the command.
$mod8v2 Target_profile.py
Execution was successful and I got the information for Target_profile.log
and Target_profile.prf as described in the tutorial.
But to the next step when i run the command
$mod8v2 Target_compare.py
i get these errors!!!!!!!!!!!!
=============================================================================
Traceback (most recent call last):
File "Target_compare.py", line 7, in ?
aln.malign3d()
File "/usr/lib/modeller8v2/modlib/modeller/alignment.py", line 210, in
malign3d
io=io.modpt, libs=libs.modpt, **vars)
File "/usr/lib/modeller8v2/modlib/modeller/util/top.py", line 93, in
malign3d
return _modeller.malign3d(aln, io, libs, *args)
_modeller.error: malign3_682E> Structural information is not available for
all sequences in the alignment. Aborting.
============================================================================
I have downloaded the necessary PDB files manually, Could you tell
which/where directory to paste these files with a detailed command list
since i am beginner to modeller.
With Regards
Robert Selwyne.