Madhan Kumar A wrote:
While trying to model my protein using Modeller 8v2, I encounter the
following error message in the log file:
* Protein specified in ALIGN_CODES(i) was not found
in the alignment file; ALIGN_CODES( 2) = ted
*
I have checked the ALI and ATM files. Everything seems to be alright.
Pls let me know what the problem could be.
Your files look OK to me, but it's impossible to actually reproduce your problem unless you send your original files. See http://salilab.org/modeller/manual/node11.html
Ben Webb, Modeller Caretaker
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