[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]

Re: [modeller_usage] The number of sequences in CHAINS_all.seq

Zhiqiang Ye wrote:

      I found an unusual thing...
      Why is there so many duplicated sequences in modlib/CHAINS_all.seq?

$ cat CHAINS_all.seq | grep "^>" | wc -l
118200

$ cat CHAINS_all.seq | grep "^>" | sort | uniq |  wc -l
59796

That file is deprecated, and contains old sequences. You should use the 
updated chains databases - available from 
http://salilab.org/modeller/supplemental.html - if you need these 
databases. Future releases of Modeller will not include the CHAINS_* files.

	Ben Webb, Modeller Caretaker
--
modeller-care@salilab.org             http://www.salilab.org/modeller/
Modeller mailing list: http://salilab.org/mailman/listinfo/modeller_usage