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Re: [modeller_usage] The number of sequences in CHAINS_all.seq

Zhiqiang Ye wrote:

      I found an unusual thing...
      Why is there so many duplicated sequences in modlib/CHAINS_all.seq?

$ cat CHAINS_all.seq | grep "^>" | wc -l
118200

$ cat CHAINS_all.seq | grep "^>" | sort | uniq |  wc -l
59796
That file is deprecated, and contains old sequences. You should use the updated chains databases - available from http://salilab.org/modeller/supplemental.html - if you need these databases. Future releases of Modeller will not include the CHAINS_* files. 

	Ben Webb, Modeller Caretaker
--
             http://www.salilab.org/modeller/
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