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Re: [modeller_usage] D-Proline problem
- To: modeller_usage@listsrv.ucsf.edu
- Subject: Re: [modeller_usage] D-Proline problem
- From: "N.Arun Prasanna" <prasanna AT bits-pilani.ac.in>
- Date: Thu, 01 Feb 2007 17:01:50 +0530
hello ben,
i am facing a major problem.
Template details:
my template is a denova protein (PDB code: 1JY4). My main aim is to
impose D-Proline on my sequence.
when i aligned and ran iteration, it says protein structure not read in.
The convention they followed for D-Proline is DPR
i tried to change it to PRO in coordinate file since i need the
D-Proline coordinate, but it is still not working.
Please suggest me how to proceed this.
Regards,
Prasanna