[modeller_usage] clustering

[Miriam Leach <Miriam.Leach@student.manchester.ac.uk>]

Hi,

I wondered if somebody could help me.
Is it at all possible to cluster existing pdb files ? If so can you tell me how
to arrange the input arguments I tried using

a=automodel env, alnfile = '',
knowns = ('pdb1', 'pdb2'...
with cluster(cluster_cut).

Any help/example scripts would be very much appreciated

Thanks

Miriam Leach