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[modeller_usage] clustering



Hi,

I wondered if somebody could help me.
Is it at all possible to cluster existing pdb files ? If so can you tell me how
to arrange the input arguments I tried using

a=automodel env, alnfile = '',
knowns = ('pdb1', 'pdb2'...
with cluster(cluster_cut).

Any help/example scripts would be very much appreciated

Thanks

Miriam Leach