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Re: [modeller_usage] clustering

Miriam Leach wrote:

I wondered if somebody could help me.
Is it at all possible to cluster existing pdb files ? If so can you tell me how
to arrange the input arguments I tried using

a=automodel env, alnfile = '',
knowns = ('pdb1', 'pdb2'...
with cluster(cluster_cut).
automodel.cluster() will make a representative of all the models built from one automodel run, by clustering. You can't use it to cluster arbitrary PDB files. 


Any help/example scripts would be very much appreciated


See http://salilab.org/modeller/wiki/Cluster_PDBs

	Ben Webb, Modeller Caretaker
--
             http://www.salilab.org/modeller/
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