Re: [modeller_usage] alignment of multiple templates

[Modeller Caretaker <>]

Bo Yang wrote:
> Thank you very much for your help. I fixed the script, and it went 
> through. Now I have a alignment from the three templates.
>  
> Then I add my sequence to the alignment using the example of 'align.py'. 
> And I have a new alignment (see attachment test.ali). In order to 
> structurally align my sequence with the templates, I try to align the 
> sequence again using the example of "align2d.py". Here is how I tried:
>  
> env = environ()
> env.io.atom_files_directory = "./:../atom_files/"
> aln = alignment(env)
> mdl = model((env, file=('2HI4-1A2', '1PQ2-2C8A', '1OG5-2C9A'), 
> model_segment=('FIRST:@', 'END:'))

You can only read in a single model at a time with 'model'. If you want 
to read multiple models, put it in a 'for' loop, just as for the earlier 
salign script you used.

	Ben Webb, Modeller Caretaker
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