Re: [modeller_usage] alignment of multiple templates

[Modeller Caretaker <modeller-care@ucsf.edu>]

Bo Yang wrote:
> I forgot to mention that the sequence that to be aligned with the other 
> three tempates does not have 3D structure. I have try the way as you 
> suggested. The modeller returned to error message saying that 2c17 does 
> not have a pdb code. Here is what I got:
>  
> runcmd______> model.read(file='2c17', (def)model_format='PDB', 
> model_segment=('FIRST:@', 'END:'))

Well, of course - model.read reads in a PDB file, so if you don't have a 
PDB file, you can't use it. Use alignment.append rather than 
alignment.append_model to add a sequence from a PIR file. See section 3 
of the basic modeling tutorial for an example.

	Ben Webb, Modeller Caretaker
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