Re: [modeller_usage] using model-addrsr in modeller9v1

[Modeller Caretaker <modeller-care@ucsf.edu>]

jinlian05 AT lzu.cn wrote:
> I am new to modeller and I have trouble creating a homology model of a
> protein using model-addrsr. By predicting secondary structure, between residues
> "305-318" is alpha-helix. I modified the model-addrsr.py script as
> shown below and I got error messages. I would appreciate it if any one
> can give me any suggestion.

This is also a Python error, not a Modeller problem. I recommend the 
excellent Python tutorial at http://docs.python.org/tut/tut.html

> class mymodel(automodel):
>     def special_restraints(self, aln):
>         rsr = self.restraints
>         at = self.atoms
> rsr.add(secondary_structure.alpha(self.residue_range('305:', '318:')))

Just like the error message says, your indentation level is incorrect. 
i.e. the last line should be lined up with the two lines above.

	Ben Webb, Modeller Caretaker
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