Re: [modeller_usage] stuck even before begining - how to create the .ali file
To: Ariel Bensimon <>
Subject: Re: [modeller_usage] stuck even before begining - how to create the .ali file
From: Modeller Caretaker <>
Date: Wed, 18 Apr 2007 12:53:46 -0700
Cc:
Ariel Bensimon wrote:
I would like to use MODELLER to structurally align a protein domain with
a known PDB. But I am stuck. I could even create the basic .ali file.
Trying using the manual. Couldn't find the basic start of things
There is no requirement to make your initial alignment in Modeller -
many people use different programs to do this. But if you did want to
use Modeller, the basic tutorial at
http://salilab.org/modeller/tutorial/basic.html takes you through a
simple case.