Re: [modeller_usage] [Fwd: Cannot generate the plot of DOPE?]

[Modeller Caretaker <>]

> I finished modelling my protein and doing the evaluation step. I run the
> file evaluate_model.py to calculate the DOPE score of my model.
> I got DOPE score  : -39521.605469 and there was no error in the log file.
>
> I use this profile file to generate the DOPE plot using GNUPLOT but this
> program show a strange line. Actually It just show the position of my
> aminoacid but no DOPE score for each.

That's because gnuplot by default will plot the first column on your y 
axis, and the first column in the profile file is just the residue 
number, so it'll plot [1,1], [2,2], [3,3] etc. - i.e. a line. You need 
to plot the last column (column 42) which is the total energy. In 
gnuplot you can do this with a command like

plot "myprotein.profile" using 1:42 with lines

	Ben Webb, Modeller Caretaker
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