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Re: [modeller_usage] use bovin rhodopsin as template

 wrote:

I want to use MODELLER9v1 to model the protein 3D structure, it belongs to the
GPCR family, I choose bovin rhodopsin as the template. I want to only use the
transmember regions of the template, but i dont know how to restraints the
template sequence.Or is there another method i can use, please?
If you want to use only part of a template sequence, simply align your model sequence only with that part of the template. 

	Ben Webb, Modeller Caretaker
--
             http://www.salilab.org/modeller/
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