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[modeller_usage] model transmenbrane regions



Hi:
My template protein belongs to the GPCR family,I want to only use the
transmembrane regions of the template,and i want to get only TM regions of target
protein, but i dont know how to do. When i align my model sequence using its TM
region with my template protein ,also using template's TM region, i get not the TM
structure, it look likes the whole structure, please?