Re: [modeller_usage] model-multiple.py error

[Eeson Rajendra <>]

Hi again

I have checked the script but cannot see the problem. The model-multiple.py 
script I am using is below and the Modeller error message is repeated at 
the bottom.

Thanks,
Eeson

***************************************
# Homology modeling with multiple templates


from modeller import *              # Load standard Modeller classes

from modeller.automodel import *    # Load the automodel class


log.verbose()    # request verbose output

env = environ()  # create a new MODELLER environment to build this model in



# directories for input atom files

env.io.atom_files_directory = ('1abc', '1def', '1ghi', '1jkl')

a = automodel	(env,
             
		alnfile  = 'RR alignment file.txt', # alignment filename
             
		knowns   = ('1abc', '1def', '1ghi', '1jkl'),     # codes of the templates
             
		sequence = 'hNTD')              # code of the target

a.starting_model= 1                 # index of the first model 

a.ending_model  = 1                 # index of the last model
                                   
					# (determines how many models to calculate)

a.make()                            # do the actual homology modeling

> *******************
> > mod9v1 model-
> multiple.py
> 'import site' failed; use -v for traceback
> Traceback (most recent call last):
>  File "model-multiple.py", line 35, in ?
>    a.make()                            # do the actual homology modeling
>  File "C:\Program 
> Files\Modeller9v1\modlib\modeller\automodel\automodel.py", li ne 108, in 
> make
>    self.homcsr(exit_stage)
>  File "C:\Program 
> Files\Modeller9v1\modlib\modeller\automodel\automodel.py", li ne 403, in 
> homcsr
>    aln = self.read_alignment()
>  File "C:\Program 
> Files\Modeller9v1\modlib\modeller\automodel\automodel.py", li ne 397, in 
> read_alignment
>    aln.append(file=self.alnfile, align_codes=self.knowns+[self.sequence])
>  File "C:\Program Files\Modeller9v1\modlib\modeller\alignment.py", line 
> 76, in append
>    io=io.modpt, libs=self.env.libs.modpt,
>  File "C:\Program Files\Modeller9v1\modlib\modeller\io_data.py", line 35, 
> in __ get_modpt
>    self.atom_files_directory)
> TypeError: in method 'set_io_data', argument 5 of type 'char const *'
>
> *********************************