Hi, I have several proteins (AA sequences) that I would like to
compare for possible interactions but I do not know where they will
bind. I looked at the example:
but this didn't help as I don't know where they will interact/bind.
I've tried a few times to enter the sequences, but obviously am
getting error messages for incorrect format. Wondering if anyone knew
how to solve this???
You presumably want to do some kind of alignment. Modeller has tools to
do this, or you can use any other sequence or structure alignment tool
that outputs PIR format files.