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[modeller_usage] query about alignment type



Hi
I am a new modeller user. I built my initial model using a simple blast
alignment and other using secondary structure alignment using same
template and targets and i got different results. Now i am a bit confused
that which type of alignment should be used for modeling. Please somebody
help in clarifying my doubt.

Regards
Bhavya


-- 
Bhavya Jindal
Research Scholar
School of Biosciences and Bioengineering
Indian Institute of Technology Bombay
Mumbai
Maharashtra 400076