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Re: [modeller_usage] Help <exec prefix>


> [root@localhost test1]# mod9v3 TvLDH.ali Could not find
> platform independent libraries <prefix> Could not find
> platform dependent libraries <exec_prefix> Consider setting
> $PYTHONHOME to <prefix>[:<exec_prefix>] 'import site' failed;
> use -v for traceback
>   File "TvLDH.ali", line 1
>     >P1;TvLDH
>     ^
> SyntaxError: invalid syntax

1) For the platform dependent library warning see documentation: http://salilab.org/modeller/release.html#issues
2) Seems you are using the wrong argument. The argument for mod9v3 should be a script file (usually ending ".py" or ".top") and rather not your alignment file (".ali").
3) It is generally not a good idea running software as root unless it is really necessary (which is not the case for modeller)


Dr Ralf Schmid
Lecturer in Bioinformatics
Department of Biochemistry
Henry Wellcome Building
University of Leicester
Lancaster Road
Leicester  LE1 9HN  UK

Tel. +44 (0)116 229 7023