Subject: [modeller_usage] one question,please answer
From: "Maryam Nikoosaleh" <>
Date: Mon, 12 May 2008 11:31:34 +0330
I have one question about
evaluation of my built model by DOPE score. After building model, I
refined the side chains of residues with SCWRL3 program.The total Dope
score of initial model was better than the refined
model;but the structure of two disallowed regions of my initial
model (with DOPE score higher than -0.03) were become
In evaluation of stereochemical features of
built models by PROCHECK, the side chains , as we expected, became
better . but the amount of bad contacts became more.
tell me please which model is better? (initial model or refined model)
One note : Before refining by SCWRL3 ,I have refined the loops of my
model with modeller;But it did not built a better model.