Dear
all,
Hi!
I have one question about evaluation of my
built model by DOPE score. After building model, I refined the side
chains of residues with SCWRL3 program.The total Dope score of initial
model was better than the refined model;but the structure of
two disallowed regions of my initial model (with DOPE score
higher than -0.03) were become better.
In evaluation of stereochemical features of built models by
PROCHECK, the side chains , as we expected, became better . but
the amount of bad contacts became more.
Could you tell me please
which model is better? (initial model or refined model)
One note
: Before refining by SCWRL3 ,I have refined the loops of my model with
modeller;But it did not built a better model.
Thanks for
your attention.
Best regards,
Nikousaleh