I have a doubt in plotting the graph for
calculating the DOPE Score using GNUPLOT. In GNUPLOT using the command
'plot "TvLDH.profile" using 1:42 with lines'. (From the Tutorial ) Only
a single graph is shown but in the tutorial 2 lines of 2 profiles are
shown.(TVLDH.profile showing red & green )
My question is how dow we compare the DOPE Score of 2 or more profiles
using GNU plot. Please give me a posetive reply
As described in the tutorial, there is a plot_profiles.py script in the
zip file that can do that. You can't do it directly with GNUPLOT since
you have to add gaps to the two profiles to account for the gaps in the
alignment, so that everything lines up. There is also a user-contributed
Perl script in the Modeller wiki that does something similar.