I'm using modeller to model in two or three steps my system.
I'm first modelling conserved residues (10 models), and then use the
best model (from modeller's objective function) to produce the loops.
From this first to the second step, i'm using a script, but i was
figuring if there was a built-in function to do this automatically
(so i could merge the two steps into one script). I would think of
best_model.py or something like this, but i'm not sure if this exists
(i think i saw something like this once but i've not been able to
find it again).