Match * ***
Alignment residue type 18 (V, VAL) does not match pdb
residue type 8 (I, ILE),
for align code 1AX8 (atom file 1AX8), pdb residue number "3", chain
Please check your alignment file header to be sure you correctly specified
the starting and ending residue numbers and chains. The alignment sequence
must match that from the atom file exactly.
Another possibility is that some residues in the atom file are missing,
perhaps because they could not be resolved experimentally. (Note that Modeller
reads only the ATOM and HETATM records in PDB, NOT the SEQRES records.)
In this case, simply replace the section of your alignment corresponding
to these missing residues with gaps.
read_te_288W> Protein not accepted: 1 1AX8
Cn u pls help regarding this ..