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[modeller_usage] Regarding energy minimization in modeller


 I am using modeller to build some homology model. But I am unable to
find any script that can be used to minimize the structure. Is there
any script available in modeller that can be used to energy minimize
the modeled structure. I try to use the old script, model_energies.py
but it give me following error message

Traceback (most recent call last):
 File "model_energies.py", line 41, in ?
   mdl.generate_topology(aln, sequence=code+'-ini')
TypeError: generate_topology() got an unexpected keyword argument 'sequence'

How modeller can be used to energy minimize a model structure. I am
using current version of modeller.

Thank you very much.