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Re: [modeller_usage] Model evaluation

vidhya ganesh wrote:
I have questions on "Model evaluation" step in "Basic modeling". As far as i know, if it is a best model,the dope score profile shows region of low energy.But, the plot in my model with template looks as if some residue position have relatively high energy and in some showing of low energy.How can i judge whether it is a good model or bad?

The only qualitative score is the total score - not the profile. The most reliable method in Modeller is to calculate the normalized DOPE score, which is a z-score. Good models are likely to have z-scores of -1, -2 or better.

	Ben Webb, Modeller Caretaker
Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage