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Re: [modeller_usage] Help with iterative modelling tutorial

On 10/09/2009 03:01 AM, Jonathan Harris wrote:
On the page http://salilab.org/modeller/tutorial/iterative.html
the tutorial says
"The insertion between position 85 and 88 of the alignment was placed in
the middle of an α-helix in the template (the "9" characters on the
first line below the sequence mark the helices). Moving the insertion to
the end of the α-helix may improve the model."
But in the two PAP examples on the page I cannot see any difference at
positions 85 - 88. What am I missing here?

Good catch! There was actually a mistake in that first alignment, which has now been corrected.

Thanks for bringing this to my attention.

	Ben Webb, Modeller Caretaker
Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage