Re: [modeller_usage] No atoms were read form the specified input pdb file
To: james09 pruza <>
Subject: Re: [modeller_usage] No atoms were read form the specified input pdb file
From: Modeller Caretaker <>
Date: Mon, 14 Dec 2009 15:00:38 -0800
Cc:
On 12/13/2009 02:33 AM, james09 pruza wrote:
While running the model-single.py, I am getting the following error---
No atoms were read form the specified input pdb file since the starting
residue no and/ or chain ID in Model_Segment <or the alignment file
header> was not found; requested starting position residue no "0" chain "A"
OK, so in that case your alignment file header must be instructing
Modeller to read from residue 0:A. See
http://salilab.org/modeller/9v7/manual/node445.html for a description of
the format (the example at that URL tells Modeller to read 5fd1 from
residue 1:A through 106:A).