On 3/11/10 10:18 AM, Will Dampier wrote:
I'm trying to use the parallel job support built into modeller. I've gotten the jobs to work with "local_slave" workers but when I try to use ssh_slave workers I get an OSError "OSError [Errno 2] No such file or directory: '/opt/apps/Protein-Threading' from <ssh_clave on iblade003". I know that ssh_slaves require a shared memory space and I know that everything in properly mounted ... running: ssh iblade003 'ls /opt/apps/Protein-Threading' return the proper results.
Hmm, that is odd, because the ssh_slave class doesn't do anything unusual - it just runs "ssh iblade003" and fires up a copy of Python at the other end. Usually I would be tempted to suspect autofs (if you auto-mount those partitions; sometimes autofs can be a little slow and not mount them in time) or a permissions/environment issue.
Ben Webb, Modeller Caretaker -- modeller-care@salilab.org http://www.salilab.org/modeller/ Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage