Re: [modeller_usage] Modeling ...

[Modeller Caretaker <modeller-care@ucsf.edu>]

On 11/28/2010 07:40 PM, bharat lal wrote:
> I want to insert a peptide fragment into one of the loops of my template
> protein structure .. Can anybody tell me how can I do it ..

This should be straightforward enough. Align your target sequence with 
two templates - the peptide fragment (one template) in the loop region, 
and your existing "template protein structure" over the rest of the 
sequence (not the loop region).

	Ben Webb, Modeller Caretaker
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