I try to build a modele with 2 protein templates. I want to modelise
just one loop of 1pkg, part of it on the template 3A2M, the rest of
the loop de novo. The rest of 1pkg must not be changed, so I put it as
BLK:
........................................KRDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYM
DMKPGVSYVVPTKADKRRSVRIGSYIERDVTPAIMEDDELALD...................................
..............................................................................
.................................................*
I get a model with 3 chains instead of one. How can I get a one-chain model?
All atoms in the pdb files are like "ATOM". Should I change it in "HETATM"?
Thanks a lot in advance,
Isaure
--
Isaure Chauvot_de_Beauchêne
PhD Student
Laboratoire de Biolgie et Pharmacologie Appliquée (Dir J.-F. Mouscadet)
CNRS - Ecole Normale Supérieure de Cachan
Equipe BioInformatique, Modélisation et Dynamique Moléculaire (BIMoDyM) (Dir
Luba.Tchertanov)
61 Av du Président Wilson
94230 Cachan
France
--- Begin Message ---
To:
Subject: BLK usage => mainy chains
From: Isaure Chauvot de Beauchene <>
Date: Mon, 24 Jan 2011 12:16:16 +0100
Disposition-notification-to:
Hello,
I try to build a modele with 2 protein templates. I want to modelise
just a loop of 1pkg, part of it on the template 3A2M, the rest of the
loop de novo. The rest of 1pkg must not be changed, so I put it as BLK:
sequence:KID:1:A:361:A::::
..............................................................................
........................................KRDSFICSKQEDHAEAALYKNLLHSKESSCSDSTNEYM
DMKPGVSYVVPTKADKRRSVRIGSYIERDVTPAIMEDDELALD...................................
..............................................................................
.................................................*
I get a model with 3 chain instead of one. How can I get a one-chain model?
All atoms in the pdb files are like "ATOM". Should I change it in "HETATM"?
Thanks a lot in advance,
Isaure
--
Isaure Chauvot_de_Beauchêne
PhD Student
Laboratoire de Biolgie et Pharmacologie Appliquée (Dir J.-F. Mouscadet)
CNRS - Ecole Normale Supérieure de Cachan
Equipe BioInformatique, Modélisation et Dynamique Moléculaire (BIMoDyM) (Dir
Luba.Tchertanov)
61 Av du Président Wilson
94230 Cachan
France