Re: [modeller_usage] restraining secondary structure

[Modeller Caretaker <>]

On 1/24/11 1:00 AM, bharat lal wrote:
> I am using the following script for restraining the beta strands in my
> protein (after searching the mailing archives):-

Your script will not work because you are using the automodel class 
rather than your custom 'mymodel' class. Replace
a = automodel(env,
with
a = mymodel(env,

This also looks like a very old Modeller script (perhaps for Modeller 
8). The way secondary structure restraints are defined has changed. See 
http://salilab.org/modeller/9v8/manual/node27.html
for the correct syntax for adding a secondary structure restraint.

	Ben Webb, Modeller Caretaker
--
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