On 01/27/2011 06:22 AM, bharat lal wrote:
I have modelled a protein using secondary structure restrained script... The model seems to be perfectly fine .. but one portion of the model is converted into a helix which has to be a loop according to the template .. how can I force that region to be a loop ???
You can't *force* it, but if you unalign the target and template in this region, loop/coil is the most likely secondary structure you'll end up with. See
http://salilab.org/archives/modeller_usage/2009/msg00170.html Ben Webb, Modeller Caretaker -- modeller-care@salilab.org http://www.salilab.org/modeller/ Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage