On 2/11/11 8:52 AM, Tuğba Küçükkal wrote:
I am new to both Modeller and homology modeling, and trying to do a simple modeling with the following script but I keep getting the error: Protein specified in ALIGN_CODES(i) was not found in the alignment file; ALIGN_CODES( 1) = proe
You call the template 'proe' in your Python script, but 'PROE' in your alignment file. Modeller is case-sensitive, so you need to change one of these. You will have the same problem with alp7/ALP7.
Ben Webb, Modeller Caretaker -- http://www.salilab.org/modeller/ Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage