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Re: [modeller_usage] Modeling domain within a domain



Hi, 

I want to model circular permutation in beta-barrel protein and when I tried it the following way I didnot get the result as expected coz the beta barrel gets distorted..

>template
AAAAAAAAAABBBBB-------BBBBBBBB

>template
--------------------------------CCCC-----------------

>target
AAAAAAAAAABBBBBCCCCBBBBBBBB


Also I want to connect the original termini with a linker which  I have created using modeler

Can anybody help ??



----
Bharat
Ph.D. Candidate
Room No. : 7202A, 2nd Floor
Biomolecular Engineering Laboratory
Division of Chemical Engineering and Polymer Science
Pusan National University
Busan -609735
South Korea
Lab phone no. - +82-51-510-3680, +82-51-583-8343
E-mail :