Dear Marco,
have you tried to perform the search for a template using fold recognition
tools such as GenThreader, 3D-PSSM and so on? They use a different criterium
to find a template with respect to BLAST and PSI-BLAST, and they are
effective in finding templates when the similarity of sequences is low.
Cheers
Anna
Date: Tue, 1 Mar 2011 14:31:22 +0000 (GMT)
From: Marco Sette <>
Subject: [modeller_usage] No template...
To: modeller <>
Message-ID: <>
Content-Type: text/plain; charset=iso-8859-1
Dear all,
I have a protein consisting of a C-terminal and N-terminal region. While for
the C-terminal one I have a good template either Modeller or Blast don't
suggest templates for the N-terminal one.
I have some suggestion using Modweb (which search performs Modweb?) but not
very good.
Could ou suggest me a website to search for a template?
I looked at the mailing list (very long...) but seems this question has not
been posed.
Many thanks,
Marco
Dr.Marco Sette, Ph.D.
Department of Chemical Sciences and Technology
University of Rome, "Tor Vergata"
via della Ricerca Scientifica, 00133, Rome, Italy
e-mail:
e-mail:
Tel.: +39-0672594424
Fax: +39-0672594328
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